Miyakogusa Predicted Gene

Lj4g3v1389240.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1389240.1 Non Chatacterized Hit- tr|I1K074|I1K074_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.53699
PE,79.03,2e-18,AvrRpt-cleavage,Pathogenic type III effector avirulence
factor Avr cleavage
site,gene.Ljchr4_pseudomol_20120830.path1.gene4386.1
         (73 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    80   4e-16
AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    79   6e-16
AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4) f...    77   2e-15
AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    75   7e-15
AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    74   3e-14
AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    72   5e-14
AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    72   7e-14
AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    72   8e-14
AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4) fami...    72   1e-13
AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 | chr3:...    51   2e-07

>AT5G55850.1 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604951 FORWARD
          LENGTH=114
          Length = 114

 Score = 79.7 bits (195), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/38 (92%), Positives = 36/38 (94%)

Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSS 42
          DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT  
Sbjct: 3  DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 40


>AT5G55850.2 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604951 FORWARD
          LENGTH=130
          Length = 130

 Score = 79.0 bits (193), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 37/39 (94%)

Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSS 42
          +DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT  
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56


>AT5G55850.3 | Symbols: NOI | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:22603617-22604850 FORWARD
          LENGTH=95
          Length = 95

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 37/39 (94%)

Query: 4  QDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSS 42
          +DKGRPLPKFGEWDVN+PASAEGFTVIFNKARDEKKT  
Sbjct: 18 RDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56


>AT5G63270.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:25365498-25365949 REVERSE
          LENGTH=80
          Length = 80

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 52/65 (80%), Gaps = 4/65 (6%)

Query: 3  SQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSA----TNMATPRKSDSESK 58
          +++KG+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT  ++     ++ +P+++ +  +
Sbjct: 2  AENKGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKTKKASGAGPNSLVSPQRNQNSDQ 61

Query: 59 NANYA 63
          N N++
Sbjct: 62 NNNHS 66


>AT2G17660.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr2:7673359-7673568 FORWARD LENGTH=69
          Length = 69

 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATNMATPRKSDSE 56
          MAS + GR LPKFGEWDVN+PA+A+GFTVIF+KA ++KKT  S+T   + RK D +
Sbjct: 1  MASNEAGRALPKFGEWDVNDPATADGFTVIFSKAGEDKKTGRSSTKTNSQRKQDGD 56


>AT3G48450.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr3:17944232-17944788 REVERSE
          LENGTH=89
          Length = 89

 Score = 72.4 bits (176), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSAT 45
          MA+ ++ RPLPKFGEWD  NP SAEGFTVIFNKARD+KKT  +A 
Sbjct: 1  MATGNRARPLPKFGEWDATNPGSAEGFTVIFNKARDDKKTMKTAV 45


>AT4G35655.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr4:16910755-16910961 FORWARD
          LENGTH=68
          Length = 68

 Score = 72.0 bits (175), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query: 1  MASQDKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATNMATPRKSDSESKNA 60
          MAS    RPLPKFGEWDVN+PA+AEGFTVIF+KA ++KKT  S++   + RK D      
Sbjct: 1  MASNSDARPLPKFGEWDVNDPATAEGFTVIFSKAGEDKKTGRSSSKAPSQRKQDGVKPTK 60

Query: 61 NYAQF 65
           +  F
Sbjct: 61 KWLCF 65


>AT5G40645.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr5:16280410-16280883 REVERSE
          LENGTH=73
          Length = 73

 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 47/62 (75%), Gaps = 7/62 (11%)

Query: 8  RPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSATNMATPRKSDSESKNANYAQFPP 67
          RPLPKFGEWDVN+PASAEGFTVIF KARD+KKT++S        ++ S+ ++ N +Q  P
Sbjct: 13 RPLPKFGEWDVNDPASAEGFTVIFAKARDDKKTNASG-------RAASQRRDNNKSQDEP 65

Query: 68 TK 69
          TK
Sbjct: 66 TK 67


>AT2G04410.1 | Symbols:  | RPM1-interacting protein 4 (RIN4)
          family protein | chr2:1534012-1535040 REVERSE LENGTH=73
          Length = 73

 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 5  DKGRPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSA 44
          DKGRPLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK    +
Sbjct: 3  DKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKS 42


>AT3G25070.1 | Symbols: RIN4 | RPM1 interacting protein 4 |
           chr3:9132458-9133747 FORWARD LENGTH=211
          Length = 211

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 30/36 (83%)

Query: 10  LPKFGEWDVNNPASAEGFTVIFNKARDEKKTSSSAT 45
           +PKFG+WD NNP+SA+G+T IFNK R+E+ + ++ +
Sbjct: 148 VPKFGDWDENNPSSADGYTHIFNKVREERSSGANVS 183