Miyakogusa Predicted Gene

Lj4g3v1389230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1389230.1 tr|Q42061|Q42061_ARATH Ribosomal protein PO
(Fragment) OS=Arabidopsis thaliana PE=2
SV=1,62.32,1e-17,Ribosomal_L10,Ribosomal protein L10/acidic P0; 60S
ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER,NULL,CUFF.49161.1
         (187 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40010.1 | Symbols:  | Ribosomal protein L10 family protein |...   156   8e-39
AT3G09200.1 | Symbols:  | Ribosomal protein L10 family protein |...   150   4e-37
AT3G11250.1 | Symbols:  | Ribosomal protein L10 family protein |...   149   1e-36
AT3G09200.2 | Symbols:  | Ribosomal protein L10 family protein |...    83   8e-17

>AT2G40010.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr2:16708578-16710448 REVERSE LENGTH=317
          Length = 317

 Score =  156 bits (394), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 114/170 (67%), Gaps = 18/170 (10%)

Query: 1   MAGKVSKA----AYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNS 56
           MA K +KA     YDSK+C+LL EYSQ+LVV+ADNVGS QLQ IR+ L GDSVV+MGKN+
Sbjct: 1   MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNT 60

Query: 57  LMKRSIIDDAEKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDP------- 109
           +MKRS+   A+KTGN+AFL+L+PLL GNV LIFTKGDL+EVSE+VAKYKV  P       
Sbjct: 61  MMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVA 120

Query: 110 ---ILMCPKYMTYDSYRTCSYLQSGQLPLGLTCCNQQSAQTSEPFLVCSK 156
              +++ P     D  +T S+ Q   +P   T  N+ + +   P  +  K
Sbjct: 121 PIDVVVQPGNTGLDPSQT-SFFQVLNIP---TKINKGTVEIITPVELIKK 166


>AT3G09200.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr3:2823364-2825020 REVERSE LENGTH=320
          Length = 320

 Score =  150 bits (380), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 87/103 (84%)

Query: 7   KAAYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNSLMKRSIIDDA 66
           K AYD+K+C+L+ EY+Q+LVV+ADNVGS QLQ IR+ L GDSVV+MGKN++MKRS+   +
Sbjct: 10  KIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHS 69

Query: 67  EKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDP 109
           E TGN A LNL+PLL GNV LIFTKGDL+EVSE+VAKYKV  P
Sbjct: 70  ENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAP 112


>AT3G11250.1 | Symbols:  | Ribosomal protein L10 family protein |
           chr3:3521453-3522826 FORWARD LENGTH=323
          Length = 323

 Score =  149 bits (376), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/103 (67%), Positives = 87/103 (84%)

Query: 7   KAAYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNSLMKRSIIDDA 66
           K AYD+K+C+L+ EY+Q+LVV+ADNVGS QLQ IR+ L GDSVV+MGKN++MKRS+   +
Sbjct: 10  KIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHS 69

Query: 67  EKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDP 109
           E +GN A LNL+PLL GNV LIFTKGDL+EVSE+VAKYKV  P
Sbjct: 70  ENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAP 112


>AT3G09200.2 | Symbols:  | Ribosomal protein L10 family protein |
           chr3:2823364-2825020 REVERSE LENGTH=287
          Length = 287

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 33/103 (32%)

Query: 7   KAAYDSKMCKLLREYSQVLVVSADNVGSNQLQGIRRALHGDSVVVMGKNSLMKRSIIDDA 66
           K AYD+K+C+L+ EY+Q+LV                                 RS+   +
Sbjct: 10  KIAYDTKLCQLIDEYTQILV---------------------------------RSVRIHS 36

Query: 67  EKTGNKAFLNLVPLLVGNVALIFTKGDLREVSEQVAKYKVVDP 109
           E TGN A LNL+PLL GNV LIFTKGDL+EVSE+VAKYKV  P
Sbjct: 37  ENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAP 79