Miyakogusa Predicted Gene

Lj4g3v1389210.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1389210.1 Non Chatacterized Hit- tr|I3SIL6|I3SIL6_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.21,0,ZINC
FINGER (C3HC4-TYPE RING FINGER) FAMILY PROTEIN,NULL; FAMILY NOT
NAMED,NULL; ZF_RING_2,Zinc fing,CUFF.49160.1
         (254 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G24440.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   282   2e-76
AT1G13195.1 | Symbols:  | RING/U-box superfamily protein | chr1:...   280   6e-76
AT1G13195.2 | Symbols:  | RING/U-box superfamily protein | chr1:...   252   2e-67
AT3G47160.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   211   3e-55
AT5G01520.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   210   6e-55
AT3G47160.2 | Symbols:  | RING/U-box superfamily protein | chr3:...   202   1e-52
AT5G58787.1 | Symbols:  | RING/U-box superfamily protein | chr5:...   197   5e-51
AT5G58787.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   177   6e-45
AT5G01520.2 | Symbols:  | RING/U-box superfamily protein | chr5:...   142   2e-34
AT1G23980.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    53   2e-07

>AT1G24440.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:8662340-8663777 FORWARD LENGTH=251
          Length = 251

 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 140/245 (57%), Positives = 175/245 (71%), Gaps = 6/245 (2%)

Query: 12  TFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLL 71
           +++DSLK LEADI+HAN LAA I  G     LQMKLV + LAP F+FL QWMDFSC  LL
Sbjct: 9   SYRDSLKILEADIEHANGLAAEIPMGKSGVRLQMKLVCSNLAPFFIFLLQWMDFSC--LL 66

Query: 72  PSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLH---DDLVDTNIMKE 128
           P +F+ F +++YK+  +G+ N   YGRKATIREFYGVILPSL+RLH    DL D ++   
Sbjct: 67  PRYFDFFHILIYKVRADGRWNRSRYGRKATIREFYGVILPSLERLHINFADLPDESLWYP 126

Query: 129 KDRSIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTR 188
             ++I        +  R    +D +RE+ECGICLE CTKMVLPNCCHAMC  CY +WNT+
Sbjct: 127 NPKAI-TKKQYDIEGSRYMNSIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTK 185

Query: 189 SESCPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLPEHIPDALFFM 248
           SESCPFCRGS+KRVNS DLWVLT   DV+D +T  +ED+L  YL +N+LP+  P+A F +
Sbjct: 186 SESCPFCRGSIKRVNSEDLWVLTCDEDVVDPETVTKEDLLRFYLHINSLPKDYPEAAFLV 245

Query: 249 YYEYL 253
           Y EYL
Sbjct: 246 YNEYL 250


>AT1G13195.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:4501778-4503347 REVERSE LENGTH=260
          Length = 260

 Score =  280 bits (716), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 133/243 (54%), Positives = 175/243 (72%), Gaps = 5/243 (2%)

Query: 13  FQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLLP 72
           + +SLK LEAD+QHAN LA +I  G  +  LQMKLV++  A + LFL +W+D S SCL+P
Sbjct: 16  YYESLKVLEADVQHANSLAEAIPMGKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIP 75

Query: 73  SHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLH---DDLVDTNIMKEK 129
            + NLF V+VYK+ ++G+P   ++GRKATI EFYGVILPSLQ LH   D+L  T+I  + 
Sbjct: 76  RYLNLFHVLVYKVQSDGQPKLTTHGRKATISEFYGVILPSLQLLHSNLDELETTDIGFDL 135

Query: 130 DRSIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRS 189
            R  + +   +   R     L+  RE ECGICLE+CTKMVLPNCCH+MC  CY +WN +S
Sbjct: 136 KRLSKKITKEARSSRFSNAGLE--REEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKS 193

Query: 190 ESCPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLPEHIPDALFFMY 249
           +SCPFCRGS+KRVNS DLWVL   +DV+D +TA RED+   YL++N+LP+  P+ALF +Y
Sbjct: 194 QSCPFCRGSMKRVNSEDLWVLAGDNDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVY 253

Query: 250 YEY 252
           YEY
Sbjct: 254 YEY 256


>AT1G13195.2 | Symbols:  | RING/U-box superfamily protein |
           chr1:4501778-4502855 REVERSE LENGTH=222
          Length = 222

 Score =  252 bits (643), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 119/219 (54%), Positives = 157/219 (71%), Gaps = 5/219 (2%)

Query: 37  GNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLLPSHFNLFRVIVYKIHTNGKPNTYSY 96
           G  +  LQMKLV++  A + LFL +W+D S SCL+P + NLF V+VYK+ ++G+P   ++
Sbjct: 2   GKNNVRLQMKLVHSNFASLLLFLLRWIDLSSSCLIPRYLNLFHVLVYKVQSDGQPKLTTH 61

Query: 97  GRKATIREFYGVILPSLQRLH---DDLVDTNIMKEKDRSIEVVIDRSADDRRKPFDLDSD 153
           GRKATI EFYGVILPSLQ LH   D+L  T+I  +  R  + +   +   R     L+  
Sbjct: 62  GRKATISEFYGVILPSLQLLHSNLDELETTDIGFDLKRLSKKITKEARSSRFSNAGLE-- 119

Query: 154 RENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRSESCPFCRGSLKRVNSGDLWVLTSS 213
           RE ECGICLE+CTKMVLPNCCH+MC  CY +WN +S+SCPFCRGS+KRVNS DLWVL   
Sbjct: 120 REEECGICLETCTKMVLPNCCHSMCIKCYRNWNLKSQSCPFCRGSMKRVNSEDLWVLAGD 179

Query: 214 SDVIDAQTAYREDILCLYLFVNNLPEHIPDALFFMYYEY 252
           +DV+D +TA RED+   YL++N+LP+  P+ALF +YYEY
Sbjct: 180 NDVVDTRTASREDLFRFYLYINSLPKDYPEALFVVYYEY 218


>AT3G47160.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:17360238-17361879 REVERSE LENGTH=245
          Length = 245

 Score =  211 bits (538), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/235 (44%), Positives = 144/235 (61%), Gaps = 4/235 (1%)

Query: 12  TFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLL 71
           +F+DSLKALEADIQHAN +A    R    A +QM+L Y   A   LFL QW D    C L
Sbjct: 5   SFKDSLKALEADIQHANTVALDYPREKDGARVQMRLSYTPAAQFLLFLVQWTD----CHL 60

Query: 72  PSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTNIMKEKDR 131
                L RV++Y  + +GK     Y RK +I++FY VI PSL +L   + D +  K+K+ 
Sbjct: 61  AGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLERGITDLDDRKQKEV 120

Query: 132 SIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRSES 191
                 ++   ++ K  ++D +RE ECGIC+E    +VLPNC H++C  CY DW+ RSES
Sbjct: 121 CKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCIKCYRDWHGRSES 180

Query: 192 CPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLPEHIPDALF 246
           CPFCR SLKRVNSGDLW+L   SD ++  T  RE+   L++++  LP  +PD +F
Sbjct: 181 CPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPLVVPDQVF 235


>AT5G01520.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:206797-208399 FORWARD LENGTH=242
          Length = 242

 Score =  210 bits (535), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 4/227 (1%)

Query: 12  TFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLL 71
           +F+DSLKALEADIQ AN LA+          +QM+L Y+  A +FLFL QW D    C  
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTD----CHF 59

Query: 72  PSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTNIMKEKDR 131
                L R+++YK + +GK     + RK +IREFY V+ PSL +LH  + D    K+K+ 
Sbjct: 60  AGALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEI 119

Query: 132 SIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRSES 191
             +    +   D+ K  ++D +RE ECGICLE   K+VLP C H+MC NCY +W  RS+S
Sbjct: 120 CDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRNWRARSQS 179

Query: 192 CPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLP 238
           CPFCRGSLKRVNSGDLW+ T S+++ D    Y+E++  L ++++ LP
Sbjct: 180 CPFCRGSLKRVNSGDLWIYTCSAEIADLPAIYKENLKRLLIYIDKLP 226


>AT3G47160.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:17360238-17361879 REVERSE LENGTH=257
          Length = 257

 Score =  202 bits (515), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 105/247 (42%), Positives = 144/247 (58%), Gaps = 16/247 (6%)

Query: 12  TFQDSLKALEADIQHANLL------------AASISRGNGSACLQMKLVYNKLAPVFLFL 59
           +F+DSLKALEADIQHAN +            A    R    A +QM+L Y   A   LFL
Sbjct: 5   SFKDSLKALEADIQHANTVLSNELGDEVIFRALDYPREKDGARVQMRLSYTPAAQFLLFL 64

Query: 60  YQWMDFSCSCLLPSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDD 119
            QW D    C L     L RV++Y  + +GK     Y RK +I++FY VI PSL +L   
Sbjct: 65  VQWTD----CHLAGTLGLLRVLIYMTYADGKTTMSVYERKTSIKDFYAVIFPSLLQLERG 120

Query: 120 LVDTNIMKEKDRSIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCK 179
           + D +  K+K+       ++   ++ K  ++D +RE ECGIC+E    +VLPNC H++C 
Sbjct: 121 ITDLDDRKQKEVCKIRYRNKDETEKVKLSEIDIEREEECGICMEMNNMVVLPNCTHSLCI 180

Query: 180 NCYSDWNTRSESCPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLPE 239
            CY DW+ RSESCPFCR SLKRVNSGDLW+L   SD ++  T  RE+   L++++  LP 
Sbjct: 181 KCYRDWHGRSESCPFCRDSLKRVNSGDLWMLMEKSDTVNMYTIERENKKRLFVYIEKLPL 240

Query: 240 HIPDALF 246
            +PD +F
Sbjct: 241 VVPDQVF 247


>AT5G58787.1 | Symbols:  | RING/U-box superfamily protein |
           chr5:23742733-23744324 FORWARD LENGTH=242
          Length = 242

 Score =  197 bits (501), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 107/236 (45%), Positives = 145/236 (61%), Gaps = 9/236 (3%)

Query: 12  TFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLL 71
           +F+DSLKALEADIQHAN LA    R    A +QM+L Y+  A  FLFL QW D    C L
Sbjct: 5   SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTD----CKL 60

Query: 72  PSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTNIMKEKDR 131
                L RV++Y  + +GK     Y RKA+IREF  VILPSL +L   + D +  K+K  
Sbjct: 61  AGFLGLLRVLIYMTYADGKTTMSVYERKASIREFQAVILPSLSQLQRGVTDIDDSKQK-- 118

Query: 132 SIEVVIDR-SADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRSE 190
             EV   R    D  +  +++ +RE ECGIC+E  +K+VLPNC H++C  CY DW  RS+
Sbjct: 119 --EVCKMRYRKKDESEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQ 176

Query: 191 SCPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLPEHIPDALF 246
           SCPFCR SLKRV+SGDLW+    +D ++     RE+   L++++  LP  +PD ++
Sbjct: 177 SCPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVY 232


>AT5G58787.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:23742733-23744324 FORWARD LENGTH=227
          Length = 227

 Score =  177 bits (449), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 135/235 (57%), Gaps = 22/235 (9%)

Query: 12  TFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLL 71
           +F+DSLKALEADIQHAN LA    R    A +QM+L Y+  A  FLFL QW D    C L
Sbjct: 5   SFKDSLKALEADIQHANTLALDYPREKDGARVQMRLSYSPTAQFFLFLVQWTD----CKL 60

Query: 72  PSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTNIMKEKDR 131
                L RV++Y  + +GK     Y RKA+IREF  +         DD     + K + R
Sbjct: 61  AGFLGLLRVLIYMTYADGKTTMSVYERKASIREFQDI---------DDSKQKEVCKMRYR 111

Query: 132 SIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSDWNTRSES 191
                      D  +  +++ +RE ECGIC+E  +K+VLPNC H++C  CY DW  RS+S
Sbjct: 112 K---------KDESEMSEIEIEREEECGICMEMNSKVVLPNCTHSLCIKCYRDWRGRSQS 162

Query: 192 CPFCRGSLKRVNSGDLWVLTSSSDVIDAQTAYREDILCLYLFVNNLPEHIPDALF 246
           CPFCR SLKRV+SGDLW+    +D ++     RE+   L++++  LP  +PD ++
Sbjct: 163 CPFCRDSLKRVDSGDLWMFLDQNDTVNLTAIARENQKRLFMYIEKLPLVVPDQVY 217


>AT5G01520.2 | Symbols:  | RING/U-box superfamily protein |
           chr5:206797-208170 FORWARD LENGTH=172
          Length = 172

 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/173 (42%), Positives = 102/173 (58%), Gaps = 4/173 (2%)

Query: 12  TFQDSLKALEADIQHANLLAASISRGNGSACLQMKLVYNKLAPVFLFLYQWMDFSCSCLL 71
           +F+DSLKALEADIQ AN LA+          +QM+L Y+  A +FLFL QW D    C  
Sbjct: 4   SFKDSLKALEADIQFANTLASEYPEEYDGGYVQMRLSYSPAAHLFLFLLQWTD----CHF 59

Query: 72  PSHFNLFRVIVYKIHTNGKPNTYSYGRKATIREFYGVILPSLQRLHDDLVDTNIMKEKDR 131
                L R+++YK + +GK     + RK +IREFY V+ PSL +LH  + D    K+K+ 
Sbjct: 60  AGALGLLRILIYKAYVDGKTTMSLHERKTSIREFYDVLFPSLLQLHGGITDVEERKQKEI 119

Query: 132 SIEVVIDRSADDRRKPFDLDSDRENECGICLESCTKMVLPNCCHAMCKNCYSD 184
             +    +   D+ K  ++D +RE ECGICLE   K+VLP C H+MC NCY +
Sbjct: 120 CDKRYRKKDRTDKGKMSEIDLEREEECGICLEIRNKVVLPTCNHSMCINCYRN 172


>AT1G23980.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:8484879-8485988 REVERSE LENGTH=369
          Length = 369

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 25/159 (15%)

Query: 50  NKLAPVFLFLYQWMD---FSCSCLLPSHFNLFRVIVYKIHTN--GKPNTYSYGRKATIRE 104
           N+++P+ LF+   +    F CS L   H  L R  + K  +N    PN  +   + +  +
Sbjct: 47  NRISPIILFIIVLLSVIFFICSIL---HL-LVRYYLKKKRSNLSSSPNESNQNPEFSDSD 102

Query: 105 FYGVILPSLQRLHDDLVDTNIMKEKDRSIEVVIDRSADDRRKPFDLDSDRENECGICL-- 162
            Y   L  L  LHD  +D  ++     ++ V + +     ++PFD        C +CL  
Sbjct: 103 TYQRQLQQLFHLHDSGLDQALID----ALPVFLYKEIKGTKEPFD--------CAVCLCE 150

Query: 163 --ESCTKMVLPNCCHAMCKNCYSDWNTRSESCPFCRGSL 199
             E     +LPNC HA   +C   W   + +CP CRG+L
Sbjct: 151 FSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTCPLCRGTL 189