Miyakogusa Predicted Gene

Lj4g3v1389190.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1389190.2 tr|J3SF18|J3SF18_CROAD Prefoldin subunit 6
OS=Crotalus adamanteus PE=2 SV=1,44.83,4e-19,Prefoldin_2,Prefoldin
beta-like; coiled-coil,NULL; SUBFAMILY NOT NAMED,NULL; PREFOLDIN
SUBUNIT 6,NUL,CUFF.49169.2
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G29990.1 | Symbols: PFD6 | prefoldin 6 | chr1:10507666-105088...   221   7e-59

>AT1G29990.1 | Symbols: PFD6 | prefoldin 6 | chr1:10507666-10508821
           FORWARD LENGTH=129
          Length = 129

 Score =  221 bits (564), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 108/129 (83%), Positives = 123/129 (95%)

Query: 1   MSSSNIRDLQRELENKANDLSKLQKDIAKNHQVRKKYTVQLGENELVLKELDLLKQDANV 60
           MSSS +RDLQR+LENKANDL K+QKDI KNHQ+RKKYT+QLGENELVLKELDLL++DANV
Sbjct: 1   MSSSTVRDLQRDLENKANDLGKIQKDIGKNHQLRKKYTIQLGENELVLKELDLLEEDANV 60

Query: 61  YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDATVQDLEEKQNSKKEAIMKVQQRIQ 120
           YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDA +QD+EEKQN+K+E IMK+QQR+Q
Sbjct: 61  YKLIGPVLVKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKLQQRLQ 120

Query: 121 SLQAGKGKA 129
           ++QAGK KA
Sbjct: 121 TIQAGKAKA 129