Miyakogusa Predicted Gene

Lj4g3v1388320.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1388320.1 tr|G7JLF1|G7JLF1_MEDTR Chromatin remodeling
complex subunit OS=Medicago truncatula GN=MTR_4g103600 P,70.1,0,SWI
complex, BAF60b domains,SWIB domain; coiled-coil,NULL; SWIB,SWIB/MDM2
domain; SUBFAMILY NOT NAME,CUFF.49113.1
         (538 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14170.1 | Symbols: CHC1 | SWIB/MDM2 domain superfamily prote...   565   e-161
AT3G01890.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |...   476   e-134

>AT5G14170.1 | Symbols: CHC1 | SWIB/MDM2 domain superfamily protein
           | chr5:4568696-4570444 REVERSE LENGTH=534
          Length = 534

 Score =  565 bits (1455), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 262/440 (59%), Positives = 340/440 (77%), Gaps = 1/440 (0%)

Query: 98  GNTHVGTAAPGTASAKRANQKPPSRGPQGSPSANQSSAFKTMELTPAPLRRKRSYPEKQI 157
           G +      PG+ + KR  QKPP R P    S N  S  +TMELTPA  ++K+  PEK +
Sbjct: 93  GPSSPSLTTPGSLNMKRFQQKPPMRPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSL 152

Query: 158 PERVAKLVPECAVYTRLRELEAQIDAALFRKKIDVQEAVRNPTCVQKTMRVYVYNTFSNQ 217
            ERVA ++PE A+YT+L E E+++DAAL RKK+D+QEA++NP C+QKT+R+YV+N+F+NQ
Sbjct: 153 QERVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQ 212

Query: 218 NKMDSGKNDAEEPSWSLKITGRLLEDGKDPVVAGVSQRESPPCPKFSAFFKKITIYLDQG 277
           N    G  +A+ P+W+LKI GR+LEDG DP   G  Q+ +P  PKFS+FFK++T+ LDQ 
Sbjct: 213 NNTIPGNPNADPPTWTLKIIGRILEDGVDPDQPGFVQKANPLHPKFSSFFKRVTVSLDQR 272

Query: 278 FYPDNHVIVWESGRSPNQRDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTQLSKVLGIE 337
            YP+N +I+WE+ RSP  ++GFE+KRKG++EF A IRL MNY PEKF +ST L  VLGIE
Sbjct: 273 LYPENPLIIWENARSPAPQEGFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGIE 332

Query: 338 FDTRPRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQRVFGEEKMKFSMASQKISQHLSLP 397
            +TRPRIIAA+WHYVK++KLQ+PNDPSFF CDA LQ+VFGEEK+KF+M SQKIS HLS P
Sbjct: 333 VETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPP 392

Query: 398 QPIHLEHKLKFSGTCPVGTACYDIQVDVPLPLEKDMSAFLTSIESHKEIDNFDEVICSSI 457
            PIHLEHK+K SG  P  +ACYD+ VDVP P+++D++  L + E +KEI+  DE IC++I
Sbjct: 393 PPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAI 452

Query: 458 KKIQGHLRRRAFFLGFSQSPAEFINSLITSQSKDLKVVAGDASHSADNERRSEFYNQSWV 517
           +KI  H RRRAFFLGFSQSP EFIN+LI SQSKDLKVVAG+AS +A+ ERRS+F+NQ WV
Sbjct: 453 RKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWV 512

Query: 518 EDAIIRYLSRK-TARSDAPG 536
           EDA+IRYL+R+  A +D PG
Sbjct: 513 EDAVIRYLNRRPAAGNDGPG 532


>AT3G01890.1 | Symbols:  | SWIB/MDM2 domain superfamily protein |
           chr3:310332-311772 FORWARD LENGTH=458
          Length = 458

 Score =  476 bits (1225), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 237/429 (55%), Positives = 304/429 (70%), Gaps = 22/429 (5%)

Query: 103 GTAAPGTASAKRANQKPPSRGPQGSPSANQSSAFKTMELTPAPLRRKRSYPEKQ-IPERV 161
           G +APG    +R   KPP  GP   P         +MELTPA  ++K   P+K  + ERV
Sbjct: 49  GISAPG----RRFPHKPPIGGPPAVPP--------SMELTPASRKKKHKLPDKSSLQERV 96

Query: 162 AKLVPECAVYTRLRELEAQIDAALFRKKIDVQEAVRNPTCVQKTMRVYVYNTFSNQNKMD 221
           A ++PE A+YT+L E E+++DAALFRKK+D+Q++++NP  +QKT+R+YV+NTFSNQ    
Sbjct: 97  AAVLPESALYTQLLEFESRVDAALFRKKVDIQDSLKNPPSIQKTLRIYVFNTFSNQIP-- 154

Query: 222 SGKNDAEEPSWSLKITGRLLEDGKDPVVAGVSQRESPPCPKFSAFFKKITIYLDQGFYPD 281
                 + P+W+L+I GR+L+        G+ Q  +P  PKFS+FFK + I LDQ  YP+
Sbjct: 155 ----GPDPPTWTLRIFGRVLDPDH---TGGLVQNSNPLYPKFSSFFKTLKISLDQSLYPE 207

Query: 282 NHVIVWESGRSPNQRDGFEVKRKGDKEFTAVIRLTMNYSPEKFMVSTQLSKVLGIEFDTR 341
           NH+I W+  RSP   +GFE+KR G +EF A I L MNY PEKF  S  L +VLGIE DTR
Sbjct: 208 NHLIEWKRDRSPAPLEGFEIKRIGCQEFAATILLEMNYVPEKFKTSPALMQVLGIEVDTR 267

Query: 342 PRIIAALWHYVKSKKLQSPNDPSFFMCDAPLQRVFGEEKMKFSMASQKISQHLSLPQPIH 401
           PRIIAA+WHYVK +KLQ+PNDPSFF CDA L  VFGEEKMKF+M S KISQHLS P PI 
Sbjct: 268 PRIIAAIWHYVKVRKLQNPNDPSFFNCDAALHSVFGEEKMKFTMLSHKISQHLSPPPPIQ 327

Query: 402 LEHKLKFSGTCPVGTACYDIQVDVPLPLEKDMSAFLTSIESHKEIDNFDEVICSSIKKIQ 461
           L HK+K SG  P  +ACYD+ VD+P P++ ++S  L + E +KEI+  DE IC +I+KI 
Sbjct: 328 LVHKIKLSGNNPAISACYDVLVDIPAPVQTELSNLLANPEKNKEIEACDEAICGAIRKIH 387

Query: 462 GHLRRRAFFLGFSQSPAEFINSLITSQSKDLKVVAGDASHSADNERRSEFYNQSWVEDAI 521
            H RRRAFFLGFSQSP EF N+L+ SQ+KDLK+VAG+AS +A+ E RSEF+NQ WVEDA 
Sbjct: 388 EHRRRRAFFLGFSQSPVEFTNALMESQTKDLKLVAGEASRNAEKEGRSEFFNQPWVEDAA 447

Query: 522 IRYLSRKTA 530
           IRYL+RK A
Sbjct: 448 IRYLNRKPA 456