Miyakogusa Predicted Gene

Lj4g3v1388310.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1388310.2 tr|F4KAP9|F4KAP9_ARATH SAP domain-containing
protein OS=Arabidopsis thaliana GN=At5g63460 PE=4 SV=1,42.42,3e-19,SAP
domain,NULL; DDA1,Ubiquitin ligase, Det1/DDB1-complexing;
SAP,DNA-binding SAP; no description,DN,CUFF.49112.2
         (144 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G63460.1 | Symbols:  | SAP domain-containing protein | chr5:2...   171   1e-43
AT5G63460.2 | Symbols:  | SAP domain-containing protein | chr5:2...   168   1e-42
AT5G63460.4 | Symbols:  | SAP domain-containing protein | chr5:2...   160   2e-40
AT5G63460.3 | Symbols:  | SAP domain-containing protein | chr5:2...    99   7e-22

>AT5G63460.1 | Symbols:  | SAP domain-containing protein |
           chr5:25413605-25415399 REVERSE LENGTH=162
          Length = 162

 Score =  171 bits (434), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 105/145 (72%), Gaps = 14/145 (9%)

Query: 9   VSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKN- 67
            S FL++LPSRG  SS V+SSNPG +RVY+C+H+TSPPE QLIKTNQQNILIRSL LK  
Sbjct: 16  ASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPEGQLIKTNQQNILIRSLLLKKQ 75

Query: 68  ------------GSDASKKRTAEKALDSRASAKRTTPINTRQEGSNSQTPNRDFHSLTVE 115
                         D  KKR A +ALD R+SAKR     +RQEGS+S+T  RDF SLTVE
Sbjct: 76  KGESSSKDSKGTAEDGPKKRAANRALDDRSSAKRAANA-SRQEGSSSRTGERDFQSLTVE 134

Query: 116 RLRALLKAKGLSTKGKKEELITRLK 140
           +LRA+LK KGL TKG+K+ELI RLK
Sbjct: 135 KLRAMLKEKGLPTKGRKDELIARLK 159


>AT5G63460.2 | Symbols:  | SAP domain-containing protein |
           chr5:25413605-25415399 REVERSE LENGTH=161
          Length = 161

 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/145 (60%), Positives = 104/145 (71%), Gaps = 15/145 (10%)

Query: 9   VSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKN- 67
            S FL++LPSRG  SS V+SSNPG +RVY+C+H+TSPPE QLIKTNQQNILIRSL LK  
Sbjct: 16  ASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPEGQLIKTNQQNILIRSLLLKKQ 75

Query: 68  ------------GSDASKKRTAEKALDSRASAKRTTPINTRQEGSNSQTPNRDFHSLTVE 115
                         D  KKR A +ALD R+SAKR    N  ++GS+S+T  RDF SLTVE
Sbjct: 76  KGESSSKDSKGTAEDGPKKRAANRALDDRSSAKRAA--NASRQGSSSRTGERDFQSLTVE 133

Query: 116 RLRALLKAKGLSTKGKKEELITRLK 140
           +LRA+LK KGL TKG+K+ELI RLK
Sbjct: 134 KLRAMLKEKGLPTKGRKDELIARLK 158


>AT5G63460.4 | Symbols:  | SAP domain-containing protein |
           chr5:25413605-25415399 REVERSE LENGTH=174
          Length = 174

 Score =  160 bits (406), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 105/157 (66%), Gaps = 26/157 (16%)

Query: 9   VSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPP------------EDQLIKTNQQ 56
            S FL++LPSRG  SS V+SSNPG +RVY+C+H+TSPP            + QLIKTNQQ
Sbjct: 16  ASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPPVIGSLRIISFRIKGQLIKTNQQ 75

Query: 57  NILIRSLTLKN-------------GSDASKKRTAEKALDSRASAKRTTPINTRQEGSNSQ 103
           NILIRSL LK                D  KKR A +ALD R+SAKR     +RQEGS+S+
Sbjct: 76  NILIRSLLLKKQKGESSSKDSKGTAEDGPKKRAANRALDDRSSAKRAANA-SRQEGSSSR 134

Query: 104 TPNRDFHSLTVERLRALLKAKGLSTKGKKEELITRLK 140
           T  RDF SLTVE+LRA+LK KGL TKG+K+ELI RLK
Sbjct: 135 TGERDFQSLTVEKLRAMLKEKGLPTKGRKDELIARLK 171


>AT5G63460.3 | Symbols:  | SAP domain-containing protein |
           chr5:25413605-25415399 REVERSE LENGTH=99
          Length = 99

 Score = 99.4 bits (246), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/132 (42%), Positives = 69/132 (52%), Gaps = 51/132 (38%)

Query: 9   VSPFLTNLPSRGLFSSPVISSNPGGMRVYVCDHETSPPEDQLIKTNQQNILIRSLTLKNG 68
            S FL++LPSRG  SS V+SSNPG +RVY+C+H+TSPP                      
Sbjct: 16  ASKFLSDLPSRGFLSSTVVSSNPGSLRVYICEHDTSPP---------------------- 53

Query: 69  SDASKKRTAEKALDSRASAKRTTPINTRQEGSNSQTPNRDFHSLTVERLRALLKAKGLST 128
                                        EGS+S+T  RDF SLTVE+LRA+LK KGL T
Sbjct: 54  -----------------------------EGSSSRTGERDFQSLTVEKLRAMLKEKGLPT 84

Query: 129 KGKKEELITRLK 140
           KG+K+ELI RLK
Sbjct: 85  KGRKDELIARLK 96