Miyakogusa Predicted Gene

Lj4g3v1386900.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1386900.2 Non Chatacterized Hit- tr|I1MUQ6|I1MUQ6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,85.33,0,seg,NULL;
INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND POLYADENYLATION
SPECIFICITY FACTOR,NULL,CUFF.49095.2
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   212   8e-56
AT1G12760.2 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   210   3e-55
AT4G11680.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   205   8e-54
AT1G63170.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   202   5e-53
AT3G61180.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   194   3e-50
AT1G68070.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   145   1e-35
AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogene...   140   4e-34
AT1G80400.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    83   9e-17
AT4G32600.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    75   2e-14

>AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:4348728-4350512 FORWARD LENGTH=408
          Length = 408

 Score =  212 bits (539), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 121/152 (79%), Gaps = 2/152 (1%)

Query: 1   MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALA 60
           +AKHLESANTMFSFIWW+IGFYWVSA GQ LAQ+SP++YWL I            C+ALA
Sbjct: 212 VAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALA 271

Query: 61  CIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQR--KSNEKLAGDTEGPVGG 118
           C+IGIAVCCCLPCIIA+LYAVADQEGAS+EDIEQL+KFKF++   +N+    + +G   G
Sbjct: 272 CVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEG 331

Query: 119 IMTECHSDSPTEHMLSAEDAECCICLSAYDDG 150
           IMTEC +DSP EH L  EDAECCICLSAY+DG
Sbjct: 332 IMTECGTDSPIEHTLLQEDAECCICLSAYEDG 363


>AT1G12760.2 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:4348941-4350512 FORWARD LENGTH=337
          Length = 337

 Score =  210 bits (534), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 103/152 (67%), Positives = 121/152 (79%), Gaps = 2/152 (1%)

Query: 1   MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALA 60
           +AKHLESANTMFSFIWW+IGFYWVSA GQ LAQ+SP++YWL I            C+ALA
Sbjct: 141 VAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALA 200

Query: 61  CIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQR--KSNEKLAGDTEGPVGG 118
           C+IGIAVCCCLPCIIA+LYAVADQEGAS+EDIEQL+KFKF++   +N+    + +G   G
Sbjct: 201 CVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEG 260

Query: 119 IMTECHSDSPTEHMLSAEDAECCICLSAYDDG 150
           IMTEC +DSP EH L  EDAECCICLSAY+DG
Sbjct: 261 IMTECGTDSPIEHTLLQEDAECCICLSAYEDG 292


>AT4G11680.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr4:7053737-7055516 REVERSE LENGTH=390
          Length = 390

 Score =  205 bits (522), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 116/150 (77%), Gaps = 5/150 (3%)

Query: 2   AKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALAC 61
           AKHLESANTMFSFIWW+IGFYWVSA GQTL+ DSPQLYWLCI            C+ALAC
Sbjct: 203 AKHLESANTMFSFIWWIIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALAC 262

Query: 62  IIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQRKSN-EKLAGDTEGPVGGIM 120
           +IG+AVCCCLPCIIA+LYAVADQEGAS+ DI+Q+ KF+F +  N EKL+G       GIM
Sbjct: 263 VIGLAVCCCLPCIIAILYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIM 318

Query: 121 TECHSDSPTEHMLSAEDAECCICLSAYDDG 150
           TEC +DSP E  LS EDAECCICL  Y+DG
Sbjct: 319 TECGTDSPIERSLSPEDAECCICLCEYEDG 348


>AT1G63170.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:23425574-23427073 FORWARD
           LENGTH=381
          Length = 381

 Score =  202 bits (515), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 104/153 (67%), Positives = 118/153 (77%), Gaps = 4/153 (2%)

Query: 1   MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALA 60
            AKHLESANTM SFIWWVIGFYWVS+ GQ LAQ SPQLYWLCI            C+ALA
Sbjct: 182 FAKHLESANTMISFIWWVIGFYWVSSGGQELAQGSPQLYWLCIVFLGFDVFFVVFCVALA 241

Query: 61  CIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQRKSNE-KLAGDTE---GPV 116
           C+IGIAVCCCLPCIIA+LYAVA+QEGAS+EDI+QL+KFKF++  +  K   D E   G  
Sbjct: 242 CVIGIAVCCCLPCIIAVLYAVAEQEGASKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDS 301

Query: 117 GGIMTECHSDSPTEHMLSAEDAECCICLSAYDD 149
           GG+MTEC +DSP EH L  EDAECCICLSAY+D
Sbjct: 302 GGVMTECGTDSPVEHALPHEDAECCICLSAYED 334


>AT3G61180.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:22645680-22647290 FORWARD LENGTH=379
          Length = 379

 Score =  194 bits (492), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 93/151 (61%), Positives = 113/151 (74%), Gaps = 1/151 (0%)

Query: 1   MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALA 60
             KHLESANTMFSF+WW+IGFYWV+AD + LAQ SPQLYWLC+            C+A+A
Sbjct: 183 FTKHLESANTMFSFVWWIIGFYWVTADTEALAQSSPQLYWLCVAFLAFDVMFVVICVAVA 242

Query: 61  CIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKF-QRKSNEKLAGDTEGPVGGI 119
            +IGIAVCCCLPCIIA+LYA+ADQEGA  E+IE+L KFKF   K++EK+ G+     GGI
Sbjct: 243 SLIGIAVCCCLPCIIAILYALADQEGAPDEEIERLLKFKFLTVKNSEKVNGEIRETQGGI 302

Query: 120 MTECHSDSPTEHMLSAEDAECCICLSAYDDG 150
           MT   ++S TE ML +EDAEC ICL AY+DG
Sbjct: 303 MTGLDTESQTERMLLSEDAECSICLCAYEDG 333


>AT1G68070.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:25515412-25516767 REVERSE
           LENGTH=343
          Length = 343

 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/152 (47%), Positives = 95/152 (62%), Gaps = 7/152 (4%)

Query: 2   AKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALAC 61
            K  ES NT+ SF+WW++GFYW+ + G  L Q++  LYWL              C+ LAC
Sbjct: 155 TKTCESMNTIISFVWWIVGFYWLVSGGDILLQNATHLYWLTFVFLAFDVFFAIFCVVLAC 214

Query: 62  IIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQRKSNEKLAGDTEGPVGGIMT 121
           +IGIA+CCCLPCIIALLYAVA QEGAS+ D+  L K++F   +N++   D     GG M 
Sbjct: 215 LIGIALCCCLPCIIALLYAVAGQEGASEADLSILPKYRFHTMNNDEKQSDG----GGKMI 270

Query: 122 ECHSDSP---TEHMLSAEDAECCICLSAYDDG 150
              + S     E +L  EDA+CCICLS+Y+DG
Sbjct: 271 PVDAASENLGNERVLLPEDADCCICLSSYEDG 302


>AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogenesis
           | chr2:324499-325895 FORWARD LENGTH=359
          Length = 359

 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 75/154 (48%), Positives = 94/154 (61%), Gaps = 9/154 (5%)

Query: 1   MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALA 60
             K  ES NT+ SFIWW+IGFYWV   G  L  ++P LYWL +            C+ LA
Sbjct: 169 FVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVFCVVLA 228

Query: 61  CIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQR-KSNEKLAGDTEGPVGGI 119
           C++GIA+CCCLPCIIALLYAVA  EG S+ ++  L  +KF+   SNEK   +  GP  G 
Sbjct: 229 CLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEK---NITGP--GK 283

Query: 120 MTECHSDS---PTEHMLSAEDAECCICLSAYDDG 150
           M     +     TE  L AEDA+CCICLS+Y+DG
Sbjct: 284 MVPIPINGLCLATERTLLAEDADCCICLSSYEDG 317


>AT1G80400.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:30225864-30227360 FORWARD LENGTH=407
          Length = 407

 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 16/154 (10%)

Query: 1   MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCI--A 58
           +  H + A   F  +W+V+G  W+   G +   DSP+LY LCI            CI  A
Sbjct: 222 LVDHFKMAIDCFFAVWFVVGNVWIFG-GHSSPSDSPKLYRLCIAFLTFS------CIGYA 274

Query: 59  LACIIGIAVCCCLPCIIALL---YAVADQEGASQEDIEQLSKFKFQRKSNEKLAGDTEGP 115
           +  I+   +CCCLPC+I++L      +   GA+ E I  L  ++F+ KS   L    EG 
Sbjct: 275 MPFILCATICCCLPCLISVLGFRENFSQTRGATAEAINALPVYRFKSKSRNDLEFSEEGE 334

Query: 116 VGGIMTECHSDSPTEHMLSAEDAECCICLSAYDD 149
            G ++      S  + ++S EDA CCICL+ Y D
Sbjct: 335 GGFLLL----GSQKKRLISGEDASCCICLTRYGD 364


>AT4G32600.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:15724010-15725737 FORWARD LENGTH=453
          Length = 453

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 51/155 (32%), Positives = 78/155 (50%), Gaps = 19/155 (12%)

Query: 1   MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCI--A 58
           + ++ + A   F  +W+V+G  W+   G + A ++P LY LC+            CI  A
Sbjct: 227 IVEYFKMALDCFFAVWFVVGNVWIFG-GHSSAAEAPNLYRLCLVFLTFS------CIGYA 279

Query: 59  LACIIGIAVCCCLPCIIALLYAVAD---QEGASQEDIEQLSKFKFQRKSNEKLAGDTEGP 115
           +  I+   +CCCLPCII++L    D     GA+ E I  L   KF+ K + +  GD  G 
Sbjct: 280 MPFILCTTICCCLPCIISILGYREDLTQPRGATPESINALPTHKFKLKKS-RSNGDDNGS 338

Query: 116 V---GGIMTECHSDSPTEHMLSAEDAECCICLSAY 147
               GG++    + +  E  +S EDA CCICL+ Y
Sbjct: 339 STSEGGVVA---AGTDNERAISGEDAVCCICLAKY 370