Miyakogusa Predicted Gene

Lj4g3v1386900.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1386900.1 Non Chatacterized Hit- tr|I1MUQ6|I1MUQ6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,77.81,0,INTEGRATOR
COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND POLYADENYLATION SPECIFICITY
FACTOR,NULL; seg,NULL,CUFF.49095.1
         (314 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11680.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   330   6e-91
AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   321   5e-88
AT1G63170.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   310   6e-85
AT1G12760.2 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   294   5e-80
AT3G61180.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   293   9e-80
AT1G68070.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger) ...   221   4e-58
AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogene...   202   3e-52
AT1G80400.1 | Symbols:  | RING/U-box superfamily protein | chr1:...    87   1e-17
AT4G32600.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    79   4e-15

>AT4G11680.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr4:7053737-7055516 REVERSE LENGTH=390
          Length = 390

 Score =  330 bits (847), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 175/314 (55%), Positives = 203/314 (64%), Gaps = 14/314 (4%)

Query: 4   TRTQEEPPDSGRRLNRRPSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAY 63
           T + +E  +   R  RR  LR+AARFLR A  RRMMREPSM+VRETAAEQLEERQSDWAY
Sbjct: 46  TISVDEESNPIHRSARRQGLREAARFLRHAGSRRMMREPSMLVRETAAEQLEERQSDWAY 105

Query: 64  SKPVVVLDILWNXXXXXXXXXXXXXSRSETPSTPLRLWILGYALQXXXXXXXXXXEFXXX 123
           SKPVV LDILWN             SR E P+ PLR+W++GY +Q          E+   
Sbjct: 106 SKPVVFLDILWNLAFVAIGVAVLILSRDEKPNMPLRVWVVGYGIQCWLHMACVCVEYRRR 165

Query: 124 XXXXEQPDGEAVXXXXXXXXXXXXXXXNYANLGQLEDPG--TSMAKHLESANTMFSFIWW 181
                  DG                   Y +L QLED G  ++ AKHLESANTMFSFIWW
Sbjct: 166 RRRRHPEDGGG-------SGLTNSSSQQYVSLAQLEDRGETSNPAKHLESANTMFSFIWW 218

Query: 182 VIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALACIIGIAVCCCLPCIIAL 241
           +IGFYWVSA GQTL+ DSPQLYWLCI            C+ALAC+IG+AVCCCLPCIIA+
Sbjct: 219 IIGFYWVSAGGQTLSSDSPQLYWLCIIFLGFDVFFVVFCVALACVIGLAVCCCLPCIIAI 278

Query: 242 LYAVADQEGASQEDIEQLSKFKFQRKSN-EKLAGDTEGPVGGIMTECHSDSPTEHMLSAE 300
           LYAVADQEGAS+ DI+Q+ KF+F +  N EKL+G       GIMTEC +DSP E  LS E
Sbjct: 279 LYAVADQEGASKNDIDQMPKFRFTKTGNVEKLSGKAR----GIMTECGTDSPIERSLSPE 334

Query: 301 DAECCICLSAYDDG 314
           DAECCICL  Y+DG
Sbjct: 335 DAECCICLCEYEDG 348


>AT1G12760.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:4348728-4350512 FORWARD LENGTH=408
          Length = 408

 Score =  321 bits (822), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 170/316 (53%), Positives = 199/316 (62%), Gaps = 16/316 (5%)

Query: 15  RRLNRRPSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILW 74
           RR  RR  LR+AARFL +AS  R+MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+W
Sbjct: 48  RRSVRRQGLREAARFLSRASSGRVMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVW 107

Query: 75  NXXXXXXXXXXXXXSRSETPSTPLRLWILGYALQXXXXXXXXXXEFXXXXXXXEQPDGEA 134
           N             SR E P  PLR+W+LGYALQ          E+              
Sbjct: 108 NLAFVSVATAILVMSRKEHPIMPLRVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTT 167

Query: 135 VXXXXX--------------XXXXXXXXXXNYANLGQLEDPGTSMAKHLESANTMFSFIW 180
                                            +LG L+   +S+AKHLESANTMFSFIW
Sbjct: 168 TPPRSRSSSSSSSSSSLEEEALGSRRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIW 227

Query: 181 WVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALACIIGIAVCCCLPCIIA 240
           W+IGFYWVSA GQ LAQ+SP++YWL I            C+ALAC+IGIAVCCCLPCIIA
Sbjct: 228 WIIGFYWVSAGGQELAQESPRIYWLSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIA 287

Query: 241 LLYAVADQEGASQEDIEQLSKFKFQR--KSNEKLAGDTEGPVGGIMTECHSDSPTEHMLS 298
           +LYAVADQEGAS+EDIEQL+KFKF++   +N+    + +G   GIMTEC +DSP EH L 
Sbjct: 288 VLYAVADQEGASKEDIEQLTKFKFRKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLL 347

Query: 299 AEDAECCICLSAYDDG 314
            EDAECCICLSAY+DG
Sbjct: 348 QEDAECCICLSAYEDG 363


>AT1G63170.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:23425574-23427073 FORWARD
           LENGTH=381
          Length = 381

 Score =  310 bits (795), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 169/306 (55%), Positives = 192/306 (62%), Gaps = 15/306 (4%)

Query: 23  LRQAARFLRQAS-GRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNXXXXXX 81
           LR+AAR LR AS GR MMREPSM+VRE AAEQLEERQSDWAYSKPVVVLD +WN      
Sbjct: 29  LREAARLLRHASSGRMMMREPSMLVREAAAEQLEERQSDWAYSKPVVVLDFVWNLAFVVV 88

Query: 82  XXXXXXXSRSETPSTPLRLWILGYALQXXXXXXXXXXEFXXXXXXXEQPDGEAVXXXXXX 141
                  S  E P+ PLR+WI+GY LQ          E+        +            
Sbjct: 89  ATAVLVLSSDENPNMPLRVWIIGYGLQCMMHMVCVCVEYRRRNSRRRRDLSPRSSSSSSS 148

Query: 142 XXXXX----------XXXXNYANLGQLEDPGTSMAKHLESANTMFSFIWWVIGFYWVSAD 191
                               Y  LGQLE+   S AKHLESANTM SFIWWVIGFYWVS+ 
Sbjct: 149 SSSSMDEEEGLGLSRNSDERYLELGQLENENNSFAKHLESANTMISFIWWVIGFYWVSSG 208

Query: 192 GQTLAQDSPQLYWLCIXXXXXXXXXXXXCIALACIIGIAVCCCLPCIIALLYAVADQEGA 251
           GQ LAQ SPQLYWLCI            C+ALAC+IGIAVCCCLPCIIA+LYAVA+QEGA
Sbjct: 209 GQELAQGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVAEQEGA 268

Query: 252 SQEDIEQLSKFKFQRKSNE-KLAGDTE---GPVGGIMTECHSDSPTEHMLSAEDAECCIC 307
           S+EDI+QL+KFKF++  +  K   D E   G  GG+MTEC +DSP EH L  EDAECCIC
Sbjct: 269 SKEDIDQLTKFKFRKVGDTMKHTVDEEQGQGDSGGVMTECGTDSPVEHALPHEDAECCIC 328

Query: 308 LSAYDD 313
           LSAY+D
Sbjct: 329 LSAYED 334


>AT1G12760.2 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:4348941-4350512 FORWARD LENGTH=337
          Length = 337

 Score =  294 bits (753), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 156/292 (53%), Positives = 182/292 (62%), Gaps = 16/292 (5%)

Query: 39  MREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNXXXXXXXXXXXXXSRSETPSTPL 98
           MREPSM+VRE AAEQLEERQSDWAYSKPVVVLDI+WN             SR E P  PL
Sbjct: 1   MREPSMLVREAAAEQLEERQSDWAYSKPVVVLDIVWNLAFVSVATAILVMSRKEHPIMPL 60

Query: 99  RLWILGYALQXXXXXXXXXXEFXXXXXXXEQPDGEAVXXXXXXXXXXX------------ 146
           R+W+LGYALQ          E+                                      
Sbjct: 61  RVWLLGYALQCVLHMVCVCVEYRRRNRRRTNRTTTTTPPRSRSSSSSSSSSSLEEEALGS 120

Query: 147 --XXXXNYANLGQLEDPGTSMAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYW 204
                    +LG L+   +S+AKHLESANTMFSFIWW+IGFYWVSA GQ LAQ+SP++YW
Sbjct: 121 RRNSGVQDLSLGHLDTESSSVAKHLESANTMFSFIWWIIGFYWVSAGGQELAQESPRIYW 180

Query: 205 LCIXXXXXXXXXXXXCIALACIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKF 264
           L I            C+ALAC+IGIAVCCCLPCIIA+LYAVADQEGAS+EDIEQL+KFKF
Sbjct: 181 LSIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAVLYAVADQEGASKEDIEQLTKFKF 240

Query: 265 QR--KSNEKLAGDTEGPVGGIMTECHSDSPTEHMLSAEDAECCICLSAYDDG 314
           ++   +N+    + +G   GIMTEC +DSP EH L  EDAECCICLSAY+DG
Sbjct: 241 RKLGDANKHTNDEAQGTTEGIMTECGTDSPIEHTLLQEDAECCICLSAYEDG 292


>AT3G61180.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:22645680-22647290 FORWARD LENGTH=379
          Length = 379

 Score =  293 bits (750), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 155/298 (52%), Positives = 185/298 (62%), Gaps = 3/298 (1%)

Query: 20  RPSLRQAARFLRQASGRRMM-REPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNXXX 78
           +P    A+R LR+AS RRMM REPS+ VRE AAEQLEERQS WAYSKP++VLDILWN   
Sbjct: 36  QPIRGAASRLLRRASNRRMMLREPSVRVREVAAEQLEERQSQWAYSKPIIVLDILWNFLF 95

Query: 79  XXXXXXXXXXSRSETPSTPLRLWILGYALQXXXXXXXXXXEFXXXXXXXEQP-DGEAVXX 137
                     S  E P  PLRLWI+GY +Q          E+         P  GE    
Sbjct: 96  VIVSIAILGFSSDEDPDVPLRLWIIGYNVQCLFHVGCVIAEYKRRRVANSPPPSGEDSSN 155

Query: 138 XXXXXXXXXXXXXNYANLGQLEDPGTSMAKHLESANTMFSFIWWVIGFYWVSADGQTLAQ 197
                           N    +D GTS  KHLESANTMFSF+WW+IGFYWV+AD + LAQ
Sbjct: 156 HESLSGSEDESDGYSINNTDDDDHGTSFTKHLESANTMFSFVWWIIGFYWVTADTEALAQ 215

Query: 198 DSPQLYWLCIXXXXXXXXXXXXCIALACIIGIAVCCCLPCIIALLYAVADQEGASQEDIE 257
            SPQLYWLC+            C+A+A +IGIAVCCCLPCIIA+LYA+ADQEGA  E+IE
Sbjct: 216 SSPQLYWLCVAFLAFDVMFVVICVAVASLIGIAVCCCLPCIIAILYALADQEGAPDEEIE 275

Query: 258 QLSKFKF-QRKSNEKLAGDTEGPVGGIMTECHSDSPTEHMLSAEDAECCICLSAYDDG 314
           +L KFKF   K++EK+ G+     GGIMT   ++S TE ML +EDAEC ICL AY+DG
Sbjct: 276 RLLKFKFLTVKNSEKVNGEIRETQGGIMTGLDTESQTERMLLSEDAECSICLCAYEDG 333


>AT1G68070.1 | Symbols:  | Zinc finger, C3HC4 type (RING finger)
           family protein | chr1:25515412-25516767 REVERSE
           LENGTH=343
          Length = 343

 Score =  221 bits (564), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 124/299 (41%), Positives = 162/299 (54%), Gaps = 25/299 (8%)

Query: 19  RRPSLRQAARFLRQASGRRMMREPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNXXX 78
           R+P +   A  L +ASGRR     SMVVRETAA++LEER++DW YSKPVV LD+LWN   
Sbjct: 26  RQPVI---AVLLNRASGRR---GASMVVRETAAQELEERRADWGYSKPVVALDMLWNTAF 79

Query: 79  XXXXXXXXXXSRSETPSTPLRLWILGYALQXXXXXXXXXXEFXXXXXXXEQPDGEAVXXX 138
                      + E P+ P+R+WI GYA+Q          EF          D EA    
Sbjct: 80  VLVAIVMLLVFKEEKPNVPIRIWICGYAIQCLVHVVLVWLEFRKRNARSRPGDLEAAQAT 139

Query: 139 XXXXXXXXXXXXNYANLGQLEDPGTSMAKHLESANTMFSFIWWVIGFYWVSADGQTLAQD 198
                       N  +  +  D      K  ES NT+ SF+WW++GFYW+ + G  L Q+
Sbjct: 140 ------------NQDSEDEDNDERFLSTKTCESMNTIISFVWWIVGFYWLVSGGDILLQN 187

Query: 199 SPQLYWLCIXXXXXXXXXXXXCIALACIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQ 258
           +  LYWL              C+ LAC+IGIA+CCCLPCIIALLYAVA QEGAS+ D+  
Sbjct: 188 ATHLYWLTFVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIALLYAVAGQEGASEADLSI 247

Query: 259 LSKFKFQRKSNEKLAGDTEGPVGGIMTECHSDSP---TEHMLSAEDAECCICLSAYDDG 314
           L K++F   +N++   D     GG M    + S     E +L  EDA+CCICLS+Y+DG
Sbjct: 248 LPKYRFHTMNNDEKQSDG----GGKMIPVDAASENLGNERVLLPEDADCCICLSSYEDG 302


>AT2G01735.1 | Symbols: RIE1 | RING-finger protein for embryogenesis
           | chr2:324499-325895 FORWARD LENGTH=359
          Length = 359

 Score =  202 bits (514), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/279 (41%), Positives = 144/279 (51%), Gaps = 15/279 (5%)

Query: 40  REPSMVVRETAAEQLEERQSDWAYSKPVVVLDILWNXXXXXXXXXXXXXSRSETPSTPLR 99
           R PSM+VRETAA  LEER+ DW YSKPVV  DILWN             +  E P+ P+R
Sbjct: 50  RAPSMLVRETAARALEERRIDWGYSKPVVAADILWNAALVLASAVMLVGTVEERPNEPIR 109

Query: 100 LWILGYALQXXXXXXXXXXEFXXXXXXXEQPDGEAVXXXXXXXXXXXXXXXNYANLGQLE 159
           +WI  Y LQ          E+          D E+                +Y       
Sbjct: 110 VWICVYGLQCLFHVVLVWSEYWRRNSTRRARDLES------YDHEDYNIEYDYEQDSDDN 163

Query: 160 DPGTSMAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXX 219
               S  K  ES NT+ SFIWW+IGFYWV   G  L  ++P LYWL +            
Sbjct: 164 STTYSFVKRCESINTVISFIWWIIGFYWVVEGGDKLLGEAPNLYWLSVIFLAIDVFFAVF 223

Query: 220 CIALACIIGIAVCCCLPCIIALLYAVADQEGASQEDIEQLSKFKFQR-KSNEKLAGDTEG 278
           C+ LAC++GIA+CCCLPCIIALLYAVA  EG S+ ++  L  +KF+   SNEK   +  G
Sbjct: 224 CVVLACLVGIALCCCLPCIIALLYAVAGTEGVSEAELGVLPLYKFKAFHSNEK---NITG 280

Query: 279 PVGGIMTECHSDS---PTEHMLSAEDAECCICLSAYDDG 314
           P  G M     +     TE  L AEDA+CCICLS+Y+DG
Sbjct: 281 P--GKMVPIPINGLCLATERTLLAEDADCCICLSSYEDG 317


>AT1G80400.1 | Symbols:  | RING/U-box superfamily protein |
           chr1:30225864-30227360 FORWARD LENGTH=407
          Length = 407

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 16/154 (10%)

Query: 165 MAKHLESANTMFSFIWWVIGFYWVSADGQTLAQDSPQLYWLCIXXXXXXXXXXXXCI--A 222
           +  H + A   F  +W+V+G  W+   G +   DSP+LY LCI            CI  A
Sbjct: 222 LVDHFKMAIDCFFAVWFVVGNVWIFG-GHSSPSDSPKLYRLCIAFLTFS------CIGYA 274

Query: 223 LACIIGIAVCCCLPCIIALL---YAVADQEGASQEDIEQLSKFKFQRKSNEKLAGDTEGP 279
           +  I+   +CCCLPC+I++L      +   GA+ E I  L  ++F+ KS   L    EG 
Sbjct: 275 MPFILCATICCCLPCLISVLGFRENFSQTRGATAEAINALPVYRFKSKSRNDLEFSEEGE 334

Query: 280 VGGIMTECHSDSPTEHMLSAEDAECCICLSAYDD 313
            G ++      S  + ++S EDA CCICL+ Y D
Sbjct: 335 GGFLLL----GSQKKRLISGEDASCCICLTRYGD 364


>AT4G32600.1 | Symbols:  | RING/U-box superfamily protein |
           chr4:15724010-15725737 FORWARD LENGTH=453
          Length = 453

 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/251 (26%), Positives = 99/251 (39%), Gaps = 36/251 (14%)

Query: 89  SRSETPSTPLRLWILGYALQXXXXXXXXXXEFXXXXXXXEQPDGEAVXXXXXXXXXXXXX 148
           S+ E P  PL  WI+GYA             +       EQ  G+               
Sbjct: 134 SKHEHPRAPLFTWIVGYACGCVATLPLLYWRYYHSNQASEQDSGQHRPNLNVAAGPFAFS 193

Query: 149 XXNYANLGQLEDPGTS-----------------MAKHLESANTMFSFIWWVIGFYWVSAD 191
               +     +   TS                 + ++ + A   F  +W+V+G  W+   
Sbjct: 194 ISRTSEADGRQTNTTSSRGSRYPGFISAARLKVIVEYFKMALDCFFAVWFVVGNVWIFG- 252

Query: 192 GQTLAQDSPQLYWLCIXXXXXXXXXXXXCI--ALACIIGIAVCCCLPCIIALLYAVAD-- 247
           G + A ++P LY LC+            CI  A+  I+   +CCCLPCII++L    D  
Sbjct: 253 GHSSAAEAPNLYRLCLVFLTFS------CIGYAMPFILCTTICCCLPCIISILGYREDLT 306

Query: 248 -QEGASQEDIEQLSKFKFQRKSNEKLAGDTEGPV---GGIMTECHSDSPTEHMLSAEDAE 303
              GA+ E I  L   KF+ K +    GD  G     GG++    + +  E  +S EDA 
Sbjct: 307 QPRGATPESINALPTHKFKLKKSRS-NGDDNGSSTSEGGVVA---AGTDNERAISGEDAV 362

Query: 304 CCICLSAYDDG 314
           CCICL+ Y + 
Sbjct: 363 CCICLAKYANN 373