Miyakogusa Predicted Gene

Lj4g3v1345770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1345770.1 tr|G7IAZ6|G7IAZ6_MEDTR Survival of motor neuron
protein-interacting protein OS=Medicago truncatula
G,41.71,2e-18,seg,NULL;
coiled-coil,NULL,NODE_82077_length_658_cov_37.095745.path1.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G42510.2 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    47   1e-05

>AT2G42510.2 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: spliceosome assembly, nuclear mRNA
           splicing, via spliceosome; LOCATED IN:
           cellular_component unknown; CONTAINS InterPro DOMAIN/s:
           Survival motor neuron interacting protein 1
           (InterPro:IPR007022); BEST Arabidopsis thaliana protein
           match is: spliceosome protein-related
           (TAIR:AT1G54380.1); Has 297 Blast hits to 270 proteins
           in 80 species: Archae - 2; Bacteria - 35; Metazoa - 62;
           Fungi - 11; Plants - 64; Viruses - 0; Other Eukaryotes -
           123 (source: NCBI BLink). | chr2:17701686-17704618
           FORWARD LENGTH=653
          Length = 653

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 53/121 (43%), Gaps = 15/121 (12%)

Query: 79  LGIEVIDETALLETIP----------RKITTAASKNARRRAXXXXXXXXXXXXQIRHHKK 128
           + I+++D+TAL + +P          R +T    K+A R+                   +
Sbjct: 299 VNIDLVDDTALFDVVPFYKKGKDHSKRPVTAHTDKDAPRKHKKVGVEKPIDKGNASSIVE 358

Query: 129 TVTAEEIPVLRNSEAKGGK-----YSRKDMMALRFVNVAGQRRFWKTIYANLESGVAQEY 183
              + ++   RNS    GK     YSR  M ++R+ ++A Q++ W  +YA L   +  EY
Sbjct: 359 RNASTKVSDFRNSGEMNGKQLRIMYSRNQMESMRYAHIANQKKLWSDLYARLLPELVTEY 418

Query: 184 D 184
           +
Sbjct: 419 E 419