Miyakogusa Predicted Gene
- Lj4g3v1345740.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1345740.1 tr|C1EDN1|C1EDN1_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17)
GN=MICPUN_102962,29.97,6e-16,seg,NULL,
NODE_36423_length_1396_cov_118.570915.path1.1
(430 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G43235.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 313 1e-85
>AT2G43235.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; Has 41 Blast hits to 41 proteins in 16
species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi -
0; Plants - 40; Viruses - 0; Other Eukaryotes - 1
(source: NCBI BLink). | chr2:17968910-17970822 REVERSE
LENGTH=437
Length = 437
Score = 313 bits (803), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/345 (48%), Positives = 228/345 (66%), Gaps = 23/345 (6%)
Query: 90 KDAYRDLQTLFTLDDNRRLVVSCRPSTLHFVGTSAALTFLVLSVFRVLVQLVSGF-GSWR 148
KDA+ DLQTL +LDDNRR+VVSC+ ST+ FVG L F+ RVLV+L S G+++
Sbjct: 101 KDAFSDLQTLISLDDNRRVVVSCKKSTMQFVGGVVILGFVFGFAIRVLVKLGSALKGNFQ 160
Query: 149 RNASTYKPVVRRDRSLGGKEVVIAWGESQSQSTPASRVQRTAIAKNK------------V 196
N K VVRRDRSLGGKEVV++ +S +SR ++ IA ++ +
Sbjct: 161 SNP---KFVVRRDRSLGGKEVVVSVDNIRS----SSRDSKSFIASDQASRSNSTPRNLHL 213
Query: 197 RVEKKLPKWWPSVINNAAVVFDVNERDEYKREAYRVVRAIVDNRMGGRDISEDDIIRLRQ 256
+ + LPKWWP+ + + + FDV ++++Y+REA R+VRAIVDNR G+DI++DDII+LR+
Sbjct: 214 KAQNNLPKWWPTSLTSQS--FDVVDKEDYQREANRIVRAIVDNRTSGKDITDDDIIQLRR 271
Query: 257 LCRFSGVQVSVEPTNIRDSLYRASVNYVLDACSSAPTTSTSIDINGEDAQQFLAGFAENI 316
+CR SGVQV+ EP N DS YR S+++VL+ACS AP S+S++I EDA++F+AG AENI
Sbjct: 272 VCRISGVQVTFEPKNTGDSFYRTSIDFVLNACSRAPWESSSVEICSEDAREFIAGLAENI 331
Query: 317 GLENXXXXXXXXXXXXXSTRSRLLQAWALEMQGKHVDATVELSKICLLLRIFXXXXXXXX 376
GL TRS LQAWALE+QGKH ++ ELSKICL+ RIF
Sbjct: 332 GLAKIDAARMVSAAVAARTRSWFLQAWALEIQGKHSESVAELSKICLIHRIFPPNEYSAE 391
Query: 377 XXXVSRGLQKHLKLEQRKHLMFLF-GKVCGEDSHRIAREALGLMH 420
V+RGL+K +KLE+R+ L+ F G C EDS R A EALGL+H
Sbjct: 392 MEMVARGLEKLMKLEERQSLLKTFVGMCCSEDSQRSAAEALGLVH 436