Miyakogusa Predicted Gene

Lj4g3v1329880.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1329880.1 Non Chatacterized Hit- tr|I1M541|I1M541_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.41995 PE,88.86,0,ATPase
domain of HSP90 chaperone/DNA topoisomerase II/histidine
kinase,ATPase-like, ATP-binding doma,CUFF.48942.1
         (376 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20780.1 | Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B | topois...   581   e-166

>AT3G20780.1 | Symbols: ATTOP6B, BIN3, HYP6, RHL3, TOP6B |
           topoisomerase 6 subunit  B | chr3:7264025-7268498
           REVERSE LENGTH=670
          Length = 670

 Score =  581 bits (1497), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 272/342 (79%), Positives = 300/342 (87%)

Query: 27  ETILKQKSPAEFFAENKNIAGFDNAGKSLYTTVRELVENSLDSAESISVLPVVEVTIEEI 86
           E+ LKQKSPAEFFAENKNIAGFDN GKSLYTTVRELVEN+LDSAESIS LP VEVTIEEI
Sbjct: 22  ESKLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENALDSAESISELPEVEVTIEEI 81

Query: 87  NRSKFNSMIGLVDRERVDAALYDDYETXXXXXXXXXXXXXXQEIQAKNASLGKKGKEASA 146
            +SKFNSMIGL+DRERVD  LYDDYET               EIQAKN + GKK KE   
Sbjct: 82  VKSKFNSMIGLIDRERVDTQLYDDYETEKARGKRLAKEARASEIQAKNLASGKKNKEPGV 141

Query: 147 TKGIKGRGEASFYRVTCKDNGKGMPHDDIPDMFGRVLSGTKYGLKQTRGKFGLGAKMALI 206
           +K +K RGEAS+Y+VTCKDNGKGMPHDDIP+MFGRVLSGTKYGLKQTRGKFGLGAKMALI
Sbjct: 142 SKVLKARGEASYYKVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGLGAKMALI 201

Query: 207 WSKMSTGLPIEISSSMRKQNYISFCRLDIDIHKNIPHVHLHEKRENNEHWHGAEIQVVIE 266
           WSKMSTGLPIEISSSM+ QNY++FCRLDIDIH+NIPH+HLHEK+ N E WHGAEIQVVIE
Sbjct: 202 WSKMSTGLPIEISSSMKSQNYVTFCRLDIDIHRNIPHIHLHEKKGNKEKWHGAEIQVVIE 261

Query: 267 GNWTTYRSKILHYMRQMAVITPYAQFVFKFMSDAPDKNVTVSFARRTDVMPPIPLETKHH 326
           GNWTTYRSKILHYMRQMAVITPYAQF+F+F+S+ P+KNVT+ F RRTDVMPPIP+ETKHH
Sbjct: 262 GNWTTYRSKILHYMRQMAVITPYAQFLFRFISETPEKNVTIKFTRRTDVMPPIPIETKHH 321

Query: 327 PSSVDLLLIKRLIAETSKQNLVQFLQHEFVNISKPYAERLIG 368
           PSSVDLLLIKRLI +TSK+ L+QFLQ+EFVNI+K  A RLIG
Sbjct: 322 PSSVDLLLIKRLITDTSKKTLLQFLQNEFVNINKTLAARLIG 363