Miyakogusa Predicted Gene
- Lj4g3v1328820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1328820.1 tr|I0Z4X8|I0Z4X8_9CHLO Hydroxymethylglutaryl-CoA
synthase OS=Coccomyxa subellipsoidea C-169 PE=4
SV=,42.86,4e-19,SUBFAMILY NOT NAMED,NULL; HYDROXYMETHYLGLUTARYL-COA
SYNTHASE,NULL; Thiolase-like,Thiolase-like; HMG_,CUFF.48933.1
(134 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA sy... 196 5e-51
AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778, FKP1 | hydroxymethyl... 195 6e-51
>AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA
synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl
coenzyme A synthase | chr4:7109124-7111901 REVERSE
LENGTH=461
Length = 461
Score = 196 bits (497), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 114/136 (83%), Gaps = 3/136 (2%)
Query: 1 MYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVM 60
MYTASLYAAF SLIH KH+ LAGKRV++FSYGSG TATMFSL+L D K PFS+SNIA+VM
Sbjct: 327 MYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVM 386
Query: 61 DVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVTSKE--TSLLSSGTFYLTEVDNMYRR 118
DV GKLK+R E+ PEKFVE MKLMEHRYG+K++VT+KE LL+ GT+YL EVD++YRR
Sbjct: 387 DVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRR 446
Query: 119 FYEQKTSESALSANGH 134
FY +K + ++ ANGH
Sbjct: 447 FYGKKGEDGSV-ANGH 461
>AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778, FKP1 |
hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase /
3-hydroxy-3-methylglutaryl coenzyme A synthase |
chr4:7109124-7111213 REVERSE LENGTH=406
Length = 406
Score = 195 bits (496), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 94/136 (69%), Positives = 114/136 (83%), Gaps = 3/136 (2%)
Query: 1 MYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVM 60
MYTASLYAAF SLIH KH+ LAGKRV++FSYGSG TATMFSL+L D K PFS+SNIA+VM
Sbjct: 272 MYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVM 331
Query: 61 DVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVTSKE--TSLLSSGTFYLTEVDNMYRR 118
DV GKLK+R E+ PEKFVE MKLMEHRYG+K++VT+KE LL+ GT+YL EVD++YRR
Sbjct: 332 DVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRR 391
Query: 119 FYEQKTSESALSANGH 134
FY +K + ++ ANGH
Sbjct: 392 FYGKKGEDGSV-ANGH 406