Miyakogusa Predicted Gene

Lj4g3v1328820.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1328820.1 tr|I0Z4X8|I0Z4X8_9CHLO Hydroxymethylglutaryl-CoA
synthase OS=Coccomyxa subellipsoidea C-169 PE=4
SV=,42.86,4e-19,SUBFAMILY NOT NAMED,NULL; HYDROXYMETHYLGLUTARYL-COA
SYNTHASE,NULL; Thiolase-like,Thiolase-like; HMG_,CUFF.48933.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA sy...   196   5e-51
AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778, FKP1 | hydroxymethyl...   195   6e-51

>AT4G11820.2 | Symbols: MVA1, FKP1 | hydroxymethylglutaryl-CoA
           synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl
           coenzyme A synthase | chr4:7109124-7111901 REVERSE
           LENGTH=461
          Length = 461

 Score =  196 bits (497), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 114/136 (83%), Gaps = 3/136 (2%)

Query: 1   MYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVM 60
           MYTASLYAAF SLIH KH+ LAGKRV++FSYGSG TATMFSL+L D K PFS+SNIA+VM
Sbjct: 327 MYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVM 386

Query: 61  DVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVTSKE--TSLLSSGTFYLTEVDNMYRR 118
           DV GKLK+R E+ PEKFVE MKLMEHRYG+K++VT+KE    LL+ GT+YL EVD++YRR
Sbjct: 387 DVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRR 446

Query: 119 FYEQKTSESALSANGH 134
           FY +K  + ++ ANGH
Sbjct: 447 FYGKKGEDGSV-ANGH 461


>AT4G11820.1 | Symbols: MVA1, HMGS, EMB2778, FKP1 |
           hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase /
           3-hydroxy-3-methylglutaryl coenzyme A synthase |
           chr4:7109124-7111213 REVERSE LENGTH=406
          Length = 406

 Score =  195 bits (496), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 114/136 (83%), Gaps = 3/136 (2%)

Query: 1   MYTASLYAAFVSLIHNKHSTLAGKRVILFSYGSGLTATMFSLQLRDGKHPFSLSNIATVM 60
           MYTASLYAAF SLIH KH+ LAGKRV++FSYGSG TATMFSL+L D K PFS+SNIA+VM
Sbjct: 272 MYTASLYAAFASLIHKKHNDLAGKRVVMFSYGSGSTATMFSLRLNDNKPPFSISNIASVM 331

Query: 61  DVAGKLKSRKEFPPEKFVEIMKLMEHRYGSKEYVTSKE--TSLLSSGTFYLTEVDNMYRR 118
           DV GKLK+R E+ PEKFVE MKLMEHRYG+K++VT+KE    LL+ GT+YL EVD++YRR
Sbjct: 332 DVGGKLKARHEYAPEKFVETMKLMEHRYGAKDFVTTKEGIIDLLAPGTYYLKEVDSLYRR 391

Query: 119 FYEQKTSESALSANGH 134
           FY +K  + ++ ANGH
Sbjct: 392 FYGKKGEDGSV-ANGH 406