Miyakogusa Predicted Gene
- Lj4g3v1327580.3
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1327580.3 tr|C1N0B3|C1N0B3_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_4819,29.54,4e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL,CUFF.48846.3
(327 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71777... 423 e-119
AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 421 e-118
AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 421 e-118
AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 421 e-118
AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 420 e-118
AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 417 e-117
AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71776... 413 e-116
AT5G59400.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 1e-08
AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 57 2e-08
>AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177709
REVERSE LENGTH=313
Length = 313
Score = 423 bits (1087), Expect = e-119, Method: Compositional matrix adjust.
Identities = 205/268 (76%), Positives = 231/268 (86%), Gaps = 3/268 (1%)
Query: 60 KATADQQGKVEEFEEGAVDSKILPYCSIDKKDKKSVGEMEQDFLQALQSFYYEGKAIMSN 119
KA+ DQ G+V E VDSKILPYCSI+K +K+++GEMEQ+FLQA+QSFYYEGKAIMSN
Sbjct: 49 KASTDQSGQVGGEE---VDSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSN 105
Query: 120 EEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEI 179
EEFDNLKEELMWEGSSVVMLSSDEQ+FLEASMAYVSG PILSD+EYD LKM+LKM+GSEI
Sbjct: 106 EEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEI 165
Query: 180 VVEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVIAXXXXXXXXXXXXXEITYLLELPEP 239
V EGPRCSLRS+KVYSDL++DY KMFLLNVPATV+A EITYLLELPEP
Sbjct: 166 VCEGPRCSLRSKKVYSDLAIDYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEP 225
Query: 240 FSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSSN 299
FSFIFTWFAAVP IV+LAL++T +I+KDFLILKGPCPNCGTEN SFFGTILSI + ++N
Sbjct: 226 FSFIFTWFAAVPAIVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTN 285
Query: 300 KVKCSNCGTEMVYDSATRLITLPEGSNA 327
VKCS CGTEMVYDS +RLITLPEG A
Sbjct: 286 NVKCSGCGTEMVYDSGSRLITLPEGGKA 313
>AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/268 (75%), Positives = 232/268 (86%), Gaps = 3/268 (1%)
Query: 60 KATADQQGKVEEFEEGAVDSKILPYCSIDKKDKKSVGEMEQDFLQALQSFYYEGKAIMSN 119
KAT +Q G V VDS +LPYCSI+K +KK++GEMEQ+FLQALQSFYY+GKAIMSN
Sbjct: 60 KATTEQSGPVGG---DNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSN 116
Query: 120 EEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEI 179
EEFDNLKEELMWEGSSVVMLSSDEQ+FLEASMAYVSG PIL+D+EYD LK++LK++GS+I
Sbjct: 117 EEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDI 176
Query: 180 VVEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVIAXXXXXXXXXXXXXEITYLLELPEP 239
V EGPRCSLRS+KVYSDL+VDY KM LLNVPATV+A EITY++ELPEP
Sbjct: 177 VSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEP 236
Query: 240 FSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSSN 299
+SFIFTWFAAVP+IV+LAL+IT +IIKDFLILKGPCPNCGTENTSFFGTILSI+SGG +N
Sbjct: 237 YSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTN 296
Query: 300 KVKCSNCGTEMVYDSATRLITLPEGSNA 327
VKC+NCGT MVYDS +RLITLPEGS A
Sbjct: 297 TVKCTNCGTAMVYDSGSRLITLPEGSQA 324
>AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/268 (75%), Positives = 232/268 (86%), Gaps = 3/268 (1%)
Query: 60 KATADQQGKVEEFEEGAVDSKILPYCSIDKKDKKSVGEMEQDFLQALQSFYYEGKAIMSN 119
KAT +Q G V VDS +LPYCSI+K +KK++GEMEQ+FLQALQSFYY+GKAIMSN
Sbjct: 60 KATTEQSGPVGG---DNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSN 116
Query: 120 EEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEI 179
EEFDNLKEELMWEGSSVVMLSSDEQ+FLEASMAYVSG PIL+D+EYD LK++LK++GS+I
Sbjct: 117 EEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDI 176
Query: 180 VVEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVIAXXXXXXXXXXXXXEITYLLELPEP 239
V EGPRCSLRS+KVYSDL+VDY KM LLNVPATV+A EITY++ELPEP
Sbjct: 177 VSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEP 236
Query: 240 FSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSSN 299
+SFIFTWFAAVP+IV+LAL+IT +IIKDFLILKGPCPNCGTENTSFFGTILSI+SGG +N
Sbjct: 237 YSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTN 296
Query: 300 KVKCSNCGTEMVYDSATRLITLPEGSNA 327
VKC+NCGT MVYDS +RLITLPEGS A
Sbjct: 297 TVKCTNCGTAMVYDSGSRLITLPEGSQA 324
>AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 421 bits (1082), Expect = e-118, Method: Compositional matrix adjust.
Identities = 202/268 (75%), Positives = 232/268 (86%), Gaps = 3/268 (1%)
Query: 60 KATADQQGKVEEFEEGAVDSKILPYCSIDKKDKKSVGEMEQDFLQALQSFYYEGKAIMSN 119
KAT +Q G V VDS +LPYCSI+K +KK++GEMEQ+FLQALQSFYY+GKAIMSN
Sbjct: 60 KATTEQSGPVGG---DNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSN 116
Query: 120 EEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEI 179
EEFDNLKEELMWEGSSVVMLSSDEQ+FLEASMAYVSG PIL+D+EYD LK++LK++GS+I
Sbjct: 117 EEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDI 176
Query: 180 VVEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVIAXXXXXXXXXXXXXEITYLLELPEP 239
V EGPRCSLRS+KVYSDL+VDY KM LLNVPATV+A EITY++ELPEP
Sbjct: 177 VSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEP 236
Query: 240 FSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSSN 299
+SFIFTWFAAVP+IV+LAL+IT +IIKDFLILKGPCPNCGTENTSFFGTILSI+SGG +N
Sbjct: 237 YSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTN 296
Query: 300 KVKCSNCGTEMVYDSATRLITLPEGSNA 327
VKC+NCGT MVYDS +RLITLPEGS A
Sbjct: 297 TVKCTNCGTAMVYDSGSRLITLPEGSQA 324
>AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=321
Length = 321
Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/268 (75%), Positives = 231/268 (86%), Gaps = 6/268 (2%)
Query: 60 KATADQQGKVEEFEEGAVDSKILPYCSIDKKDKKSVGEMEQDFLQALQSFYYEGKAIMSN 119
KAT +Q G VDS +LPYCSI+K +KK++GEMEQ+FLQALQSFYY+GKAIMSN
Sbjct: 60 KATTEQSGG------DNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSN 113
Query: 120 EEFDNLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEI 179
EEFDNLKEELMWEGSSVVMLSSDEQ+FLEASMAYVSG PIL+D+EYD LK++LK++GS+I
Sbjct: 114 EEFDNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDI 173
Query: 180 VVEGPRCSLRSRKVYSDLSVDYLKMFLLNVPATVIAXXXXXXXXXXXXXEITYLLELPEP 239
V EGPRCSLRS+KVYSDL+VDY KM LLNVPATV+A EITY++ELPEP
Sbjct: 174 VSEGPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEP 233
Query: 240 FSFIFTWFAAVPLIVWLALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSSN 299
+SFIFTWFAAVP+IV+LAL+IT +IIKDFLILKGPCPNCGTENTSFFGTILSI+SGG +N
Sbjct: 234 YSFIFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTN 293
Query: 300 KVKCSNCGTEMVYDSATRLITLPEGSNA 327
VKC+NCGT MVYDS +RLITLPEGS A
Sbjct: 294 TVKCTNCGTAMVYDSGSRLITLPEGSQA 321
>AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=322
Length = 322
Score = 417 bits (1073), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/251 (78%), Positives = 225/251 (89%)
Query: 77 VDSKILPYCSIDKKDKKSVGEMEQDFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSV 136
VDS +LPYCSI+K +KK++GEMEQ+FLQALQSFYY+GKAIMSNEEFDNLKEELMWEGSSV
Sbjct: 72 VDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEFDNLKEELMWEGSSV 131
Query: 137 VMLSSDEQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEIVVEGPRCSLRSRKVYSD 196
VMLSSDEQ+FLEASMAYVSG PIL+D+EYD LK++LK++GS+IV EGPRCSLRS+KVYSD
Sbjct: 132 VMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSEGPRCSLRSKKVYSD 191
Query: 197 LSVDYLKMFLLNVPATVIAXXXXXXXXXXXXXEITYLLELPEPFSFIFTWFAAVPLIVWL 256
L+VDY KM LLNVPATV+A EITY++ELPEP+SFIFTWFAAVP+IV+L
Sbjct: 192 LAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSFIFTWFAAVPVIVYL 251
Query: 257 ALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSSNKVKCSNCGTEMVYDSAT 316
AL+IT +IIKDFLILKGPCPNCGTENTSFFGTILSI+SGG +N VKC+NCGT MVYDS +
Sbjct: 252 ALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVKCTNCGTAMVYDSGS 311
Query: 317 RLITLPEGSNA 327
RLITLPEGS A
Sbjct: 312 RLITLPEGSQA 322
>AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177612
REVERSE LENGTH=296
Length = 296
Score = 413 bits (1061), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/251 (78%), Positives = 222/251 (88%)
Query: 77 VDSKILPYCSIDKKDKKSVGEMEQDFLQALQSFYYEGKAIMSNEEFDNLKEELMWEGSSV 136
VDSKILPYCSI+K +K+++GEMEQ+FLQA+QSFYYEGKAIMSNEEFDNLKEELMWEGSSV
Sbjct: 46 VDSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSV 105
Query: 137 VMLSSDEQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEIVVEGPRCSLRSRKVYSD 196
VMLSSDEQ+FLEASMAYVSG PILSD+EYD LKM+LKM+GSEIV EGPRCSLRS+KVYSD
Sbjct: 106 VMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSD 165
Query: 197 LSVDYLKMFLLNVPATVIAXXXXXXXXXXXXXEITYLLELPEPFSFIFTWFAAVPLIVWL 256
L++DY KMFLLNVPATV+A EITYLLELPEPFSFIFTWFAAVP IV+L
Sbjct: 166 LAIDYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYL 225
Query: 257 ALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSSNKVKCSNCGTEMVYDSAT 316
AL++T +I+KDFLILKGPCPNCGTEN SFFGTILSI + ++N VKCS CGTEMVYDS +
Sbjct: 226 ALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVYDSGS 285
Query: 317 RLITLPEGSNA 327
RLITLPEG A
Sbjct: 286 RLITLPEGGKA 296
>AT5G59400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: PGR5-like B
(TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:23957756-23959518 FORWARD
LENGTH=299
Length = 299
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 33/205 (16%)
Query: 143 EQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEIVVEGPRCSLRSRKVYSD------ 196
E + +A AY +GKP++ D +D ++++L+ GS+ VV+ PRCSL + Y+D
Sbjct: 75 EALYRQAKDAYYNGKPLIVDDMFDRVELKLRWYGSKSVVKYPRCSLLRQSTYADAEDDAS 134
Query: 197 ----LSVDYLKMFLLNVPATVIAXXXXXXXXXXX---XXEITYLLELPEPFSFIFTWFAA 249
L+ ++ +FL A V+ + Y +L I + F
Sbjct: 135 QVLLLATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDSGLVYSSQLSSSVP-ILSKFNG 193
Query: 250 V-----------PLIVWLALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSS 298
+ P+ + + D LKG CPNCG E F + S S S+
Sbjct: 194 ILLSVLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNCGEE---VFAFVRSDQSNRSA 250
Query: 299 NKVKCSNCGTEM-----VYDSATRL 318
+K C C + V SA+RL
Sbjct: 251 HKADCHVCECTLEFRTKVEKSASRL 275
>AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: PGR5-like B
(TAIR:AT4G11960.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:23957756-23959518 FORWARD LENGTH=301
Length = 301
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 28/188 (14%)
Query: 143 EQKFLEASMAYVSGKPILSDKEYDDLKMRLKMNGSEIVVEGPRCSLRSRKVYSD------ 196
E + +A AY +GKP++ D +D ++++L+ GS+ VV+ PRCSL + Y+D
Sbjct: 75 EALYRQAKDAYYNGKPLIVDDMFDRVELKLRWYGSKSVVKYPRCSLLRQSTYADAEDDAS 134
Query: 197 ----LSVDYLKMFLLNVPATVIAXXXXXXXXXXX---XXEITYLLELPEPFSFIFTWFAA 249
L+ ++ +FL A V+ + Y +L I + F
Sbjct: 135 QVLLLATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDSGLVYSSQLSSSVP-ILSKFNG 193
Query: 250 V-----------PLIVWLALTITNVIIKDFLILKGPCPNCGTENTSFFGTILSIASGGSS 298
+ P+ + + D LKG CPNCG E F + S S S+
Sbjct: 194 ILLSVLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNCGEE---VFAFVRSDQSNRSA 250
Query: 299 NKVKCSNC 306
+K C C
Sbjct: 251 HKADCHVC 258