Miyakogusa Predicted Gene

Lj4g3v1327520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1327520.1 Non Chatacterized Hit- tr|B4FD00|B4FD00_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,39.82,7e-17,seg,NULL,CUFF.48832.1
         (243 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12530.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   141   4e-34
AT1G56420.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    64   1e-10

>AT1G12530.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G56420.1); Has 54 Blast hits to 53 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:4269122-4270771 REVERSE
           LENGTH=193
          Length = 193

 Score =  141 bits (356), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/245 (39%), Positives = 125/245 (51%), Gaps = 54/245 (22%)

Query: 1   MASNGEVIGKEEVIAKLKDDGDFDXXXXXXXXXXXDNEELRQHITSIVKQSVALNRDGAE 60
           M      I KEEV+ KLKDDGDFD           +NE+LR ++ S+VK+S +L R GA+
Sbjct: 1   MMGMARKISKEEVVEKLKDDGDFDRLRLKIIRRLKENEDLRNNMISVVKESTSLKRHGAQ 60

Query: 61  NMKPRQLSDSIYEEVGEKVMSQISDSLWQIIRSNDGMKGEIAETVQSVYDKLANPKGKDE 120
           NMK RQLSD+I+EEVG K++SQ+SD LW IIRS DGMK EI ETVQSVY  L+NP+G   
Sbjct: 61  NMKTRQLSDAIFEEVGSKMLSQLSDGLWGIIRSEDGMKNEIRETVQSVYATLSNPRG--- 117

Query: 121 VLLSTSDGVPVQRQGESASATEVDDTLHENEPEEPPGFTXXXXXXXXXXXEKQDKGHEEQ 180
                      +++G SA          E E + P                         
Sbjct: 118 -----------EKRGTSA---------REMEHKIPT------------------------ 133

Query: 181 DKGKAQVQRQGSPAEQKEDSQPSQDTHGGDDNSNAPPGFSRDMEHNQPSDCSD--EDPDL 238
            K +A+     SPA     S+  Q+   G    N     S D++ N+    +D  EDP+L
Sbjct: 134 PKKEARTDFNTSPA-----SKQKQELIKGAVEDNKGEACSDDVQDNKGEAYNDDEEDPEL 188

Query: 239 PPGFG 243
           PPGFG
Sbjct: 189 PPGFG 193


>AT1G56420.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G12530.1); Has 58 Blast hits to 58 proteins in
           16 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi
           - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr1:21122772-21124234 REVERSE
           LENGTH=183
          Length = 183

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%)

Query: 3   SNGEVIGKEEVIAKLKDDGDFDXXXXXXXXXXXDNEELRQHITSIVKQSVALNRDGAENM 62
           S+  VI  E+V+  L +DG  D            NEEL+     + ++S  LN  GAE  
Sbjct: 2   SSSSVIKPEDVLEHLMNDGTIDALRLRIINQLKANEELKSTTIKMAEESKVLNTPGAEKQ 61

Query: 63  KPRQLSDSIYEEVGEKVMSQISDSLWQIIRSNDGMKGEIAETVQSVYDKLA 113
             R+L D++ +E+   V+ + S S+W +I   DG+  EI ETV+ V+  L+
Sbjct: 62  TKRELFDALRQELEGPVLEKASKSVWDLIIEKDGLGKEINETVERVFCHLS 112