Miyakogusa Predicted Gene

Lj4g3v1316340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1316340.1 Non Chatacterized Hit- tr|B9FLZ8|B9FLZ8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa subsp,39.53,2e-19,
,CUFF.48822.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12340.1 | Symbols:  | copper ion binding | chr4:7321492-7322...   125   1e-29

>AT4G12340.1 | Symbols:  | copper ion binding | chr4:7321492-7322004
           REVERSE LENGTH=170
          Length = 170

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/165 (43%), Positives = 109/165 (66%), Gaps = 9/165 (5%)

Query: 1   MGEFTIQISNELVNQLVD-DPVPKKKIRRNRRKVAKETEKPQSKVTGKPENAAAPGWPVQ 59
           MG+F+IQIS++L+NQL + +  PK++ ++ + KV+     PQSK     +    P    +
Sbjct: 1   MGDFSIQISSKLINQLAEGNDQPKRRAKKTKPKVS-----PQSKQKTNQDEEKKPNPVAE 55

Query: 60  SPLFLPAKPPVQ---PADPEIDGIRSVLRESEKVLESLQKQEENMLQEVTQKAKDLHDKE 116
            P+  P   P+     A  E++ I+SV++ESEKVLE L+ QE+N+++EVT++AKDL +KE
Sbjct: 56  LPMQPPFFFPIPPQGAASTELESIKSVVKESEKVLEKLELQEKNIVREVTERAKDLREKE 115

Query: 117 YKLPNPKPEPCIAERLATLSCYKEHIKDPLKCSAFVTNFAGCLRK 161
           +K+P PKP PC ++  A + CYKE+I  PLKCS FV +F  C R+
Sbjct: 116 FKIPEPKPMPCSSDHEAWMKCYKENIGSPLKCSGFVKSFQDCARR 160