Miyakogusa Predicted Gene

Lj4g3v1314910.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1314910.1 Non Chatacterized Hit- tr|I1I3E2|I1I3E2_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,36.55,0.00000000003,seg,NULL,gene.g54489.t1.1
         (291 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G12230.1 | Symbols:  | alpha/beta-Hydrolases superfamily prot...    69   3e-12

>AT4G12230.1 | Symbols:  | alpha/beta-Hydrolases superfamily protein
           | chr4:7284645-7287348 FORWARD LENGTH=392
          Length = 392

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/109 (41%), Positives = 52/109 (47%), Gaps = 47/109 (43%)

Query: 7   VETLSREDLASRLSLTTDDGSVGPLLLSDSCITIMD------------------------ 42
           VETLS++DLASRL+LT D  SVG LLLSDS +TIMD                        
Sbjct: 184 VETLSKDDLASRLTLTVDAASVGSLLLSDSSVTIMDTNDYCAIPQHLKDELTERYPEARR 243

Query: 43  -----------------------LHLRRVGVEPRPDLVHGIPKGDLGGS 68
                                  LHLRRVGVEPRP++V  IPKG   G+
Sbjct: 244 AYLKSGGDFPFLSRPDEVNLHLQLHLRRVGVEPRPEVVKSIPKGGADGT 292