Miyakogusa Predicted Gene

Lj4g3v1313800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1313800.1 Non Chatacterized Hit- tr|I1K0H7|I1K0H7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26389
PE,60.19,6e-19,seg,NULL,CUFF.48793.1
         (122 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G62850.3 | Symbols:  | Class I peptide chain release factor |...    48   2e-06
AT1G62850.2 | Symbols:  | Class I peptide chain release factor |...    48   2e-06

>AT1G62850.3 | Symbols:  | Class I peptide chain release factor |
           chr1:23272608-23274211 REVERSE LENGTH=236
          Length = 236

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 9   SRMVLNEMLHLSFTLPFSSLRVGSVLSRALPFSPYRNTSLLQSRHSRFPAIRCAXXXXXX 68
           + M+L E +H    L  SS    S+L   L  +P    S + S +SR  ++RCA      
Sbjct: 8   TNMILREFIHHPLLLHSSSKSCQSLLP-CLRLTPL--ISPIHS-NSRLVSVRCAASTSGG 63

Query: 69  XX---XXXXRLSQVQHLLHEAEQRALSADTGPIPKITL 103
                    RLSQVQ +LHEAE+RA SA   P P+ITL
Sbjct: 64  SGGDRKVSSRLSQVQQMLHEAEERASSAGNEPTPQITL 101


>AT1G62850.2 | Symbols:  | Class I peptide chain release factor |
           chr1:23272608-23274211 REVERSE LENGTH=236
          Length = 236

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 50/98 (51%), Gaps = 7/98 (7%)

Query: 9   SRMVLNEMLHLSFTLPFSSLRVGSVLSRALPFSPYRNTSLLQSRHSRFPAIRCAXXXXXX 68
           + M+L E +H    L  SS    S+L   L  +P    S + S +SR  ++RCA      
Sbjct: 8   TNMILREFIHHPLLLHSSSKSCQSLLP-CLRLTPL--ISPIHS-NSRLVSVRCAASTSGG 63

Query: 69  XX---XXXXRLSQVQHLLHEAEQRALSADTGPIPKITL 103
                    RLSQVQ +LHEAE+RA SA   P P+ITL
Sbjct: 64  SGGDRKVSSRLSQVQQMLHEAEERASSAGNEPTPQITL 101