Miyakogusa Predicted Gene
- Lj4g3v1313780.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1313780.1 Non Chatacterized Hit- tr|Q2PEX9|Q2PEX9_TRIPR
Putative uncharacterized protein OS=Trifolium
pratense,62.97,0,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.48799.1
(337 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22740.2 | Symbols: | glycine-rich protein | chr4:11944050-1... 207 6e-54
AT4G22740.1 | Symbols: | glycine-rich protein | chr4:11944050-1... 207 6e-54
AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 164 1e-40
AT2G45380.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 107 8e-24
>AT4G22740.2 | Symbols: | glycine-rich protein |
chr4:11944050-11945565 REVERSE LENGTH=356
Length = 356
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 133/309 (43%), Positives = 172/309 (55%), Gaps = 37/309 (11%)
Query: 33 LISNFFGGRDPFEDPFFTRPLGG-MFESSXXXXXXXXXXXXNMQPSGFL-THQPPEPSRG 90
L+SNFFGGRDPF+DPFFT+P GG MF+S+ + P GF+ +QPP PSR
Sbjct: 46 LMSNFFGGRDPFDDPFFTQPFGGGMFQSNFFGPSMNPFAEMHRLPQGFIENNQPPGPSRS 105
Query: 91 RGPIIEELNSDDENE-EAKEVKKDNPRKHSRSENEPFVEHPDGGLEGKKSRHLQGRH-DY 148
RGP+IEE++SDDE E E + KK + KH RS +E E D + +++R +Q + +
Sbjct: 106 RGPVIEEIDSDDEKEGEGDKEKKGSLGKHGRSSSE--AETEDARVRERRNRQMQSMNVNA 163
Query: 149 NRFNMELXXXXXXXX----------------------XTRSFSFQSSTVSYGGANXXXXX 186
R N E+ T S+SFQSSTV+YGG N
Sbjct: 164 ERRNREMQNMNVNAERRNPQMQNMNVNAMVNNGQWQPQTGSYSFQSSTVTYGGQNGNYYT 223
Query: 187 XXXXXXXXXDGVTFEESKEADSSTRQASHRISRGLHGKGHSLARKLNSDGKVDTMQTLHN 246
DG+T EES+EA+++TR+A+H ISRGLH KGH++ARKLNSDG+VDT QTLHN
Sbjct: 224 SSKTRRTGSDGLTLEESREANTATREAAHMISRGLHNKGHTVARKLNSDGRVDTTQTLHN 283
Query: 247 LNEDELVGFEEEWKGKG--QKYLPGWVGSIGADHSGQAQQARQGGWMLPS--PEHSHPGG 302
LNEDEL GFE+ W G Q LP GS G+ + Q +LPS P SH
Sbjct: 284 LNEDELAGFEQSWSGNARRQMQLPSRSGSFGSGLVNREQP-----MLLPSTDPSPSHARA 338
Query: 303 STEARGKVG 311
+ R K
Sbjct: 339 ESSRRPKAA 347
>AT4G22740.1 | Symbols: | glycine-rich protein |
chr4:11944050-11945565 REVERSE LENGTH=356
Length = 356
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 133/309 (43%), Positives = 172/309 (55%), Gaps = 37/309 (11%)
Query: 33 LISNFFGGRDPFEDPFFTRPLGG-MFESSXXXXXXXXXXXXNMQPSGFL-THQPPEPSRG 90
L+SNFFGGRDPF+DPFFT+P GG MF+S+ + P GF+ +QPP PSR
Sbjct: 46 LMSNFFGGRDPFDDPFFTQPFGGGMFQSNFFGPSMNPFAEMHRLPQGFIENNQPPGPSRS 105
Query: 91 RGPIIEELNSDDENE-EAKEVKKDNPRKHSRSENEPFVEHPDGGLEGKKSRHLQGRH-DY 148
RGP+IEE++SDDE E E + KK + KH RS +E E D + +++R +Q + +
Sbjct: 106 RGPVIEEIDSDDEKEGEGDKEKKGSLGKHGRSSSE--AETEDARVRERRNRQMQSMNVNA 163
Query: 149 NRFNMELXXXXXXXX----------------------XTRSFSFQSSTVSYGGANXXXXX 186
R N E+ T S+SFQSSTV+YGG N
Sbjct: 164 ERRNREMQNMNVNAERRNPQMQNMNVNAMVNNGQWQPQTGSYSFQSSTVTYGGQNGNYYT 223
Query: 187 XXXXXXXXXDGVTFEESKEADSSTRQASHRISRGLHGKGHSLARKLNSDGKVDTMQTLHN 246
DG+T EES+EA+++TR+A+H ISRGLH KGH++ARKLNSDG+VDT QTLHN
Sbjct: 224 SSKTRRTGSDGLTLEESREANTATREAAHMISRGLHNKGHTVARKLNSDGRVDTTQTLHN 283
Query: 247 LNEDELVGFEEEWKGKG--QKYLPGWVGSIGADHSGQAQQARQGGWMLPS--PEHSHPGG 302
LNEDEL GFE+ W G Q LP GS G+ + Q +LPS P SH
Sbjct: 284 LNEDELAGFEQSWSGNARRQMQLPSRSGSFGSGLVNREQP-----MLLPSTDPSPSHARA 338
Query: 303 STEARGKVG 311
+ R K
Sbjct: 339 ESSRRPKAA 347
>AT2G45380.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: inflorescence
meristem, flower, cultured cell; EXPRESSED DURING: petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: Calcium-binding EF-hand
family protein (TAIR:AT4G34070.1); Has 171 Blast hits to
170 proteins in 31 species: Archae - 2; Bacteria - 0;
Metazoa - 68; Fungi - 0; Plants - 94; Viruses - 0; Other
Eukaryotes - 7 (source: NCBI BLink). |
chr2:18699588-18703093 REVERSE LENGTH=494
Length = 494
Score = 164 bits (414), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/281 (39%), Positives = 147/281 (52%), Gaps = 38/281 (13%)
Query: 36 NFFGGRDPFEDPFFTRPLGGMFESSXXXXXXXXXXXXNMQPSGFLTHQPPEPSRGRGPII 95
+ FGGRDPF+DPFF+RP + E S N SG + + GRG I
Sbjct: 234 SLFGGRDPFDDPFFSRPFEDLLEPS------------NTFSSGASFSNAHKNNGGRGLTI 281
Query: 96 EELNSDDENEEAKEVKKDNPRKHSRSENEPFVEHPDGGLEG-KKSRHLQGRHDYNRFNME 154
EEL SD+E EE K++ D+ ++H+ S N+P VEHP+ + +K +++ R D+NR
Sbjct: 282 EELPSDEEVEERKDIGIDD-QEHASSVNKPSVEHPEDDSDAERKIQNVNQRSDFNR---- 336
Query: 155 LXXXXXXXXXTRSFSFQSSTVSYGGANXXXXXXXXXXXXXXDGVTFEESKEADSSTRQAS 214
+F S V+YGG + DG+ EESKEAD +T +A+
Sbjct: 337 ---REGTQSRANTFRHHISKVTYGGIHGAYYTSTRTRRKDGDGMVVEESKEADKTTGEAT 393
Query: 215 HRISRGLHGKGHSLARKLNSDGKVDTMQTLHNLNEDELVGFEEEWKGKGQKYLPGWVGSI 274
HRISRG++ KGHS+ RKLNS G V++ QTLHNL+EDEL GFEE WKG S+
Sbjct: 394 HRISRGINDKGHSVTRKLNSSGGVESTQTLHNLDEDELSGFEEAWKGN---------SSL 444
Query: 275 GADHSGQAQQARQGGWMLPS-------PEHSHPGGSTEARG 308
G H GGW+LPS + S G S A G
Sbjct: 445 GK-HEFTGSDNSFGGWVLPSLDQIRRQTDQSQTGSSRSATG 484
>AT2G45380.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: inflorescence
meristem, flower, cultured cell; EXPRESSED DURING: petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: glycine-rich protein
(TAIR:AT4G22740.2); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:18699588-18700524 REVERSE LENGTH=186
Length = 186
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 91/179 (50%), Gaps = 24/179 (13%)
Query: 137 KKSRHLQGRHDYNRFNMELXXXXXXXXXTRSFSFQSSTVSYGGANXXXXXXXXXXXXXXD 196
+K +++ R D+NR +F S V+YGG + D
Sbjct: 15 RKIQNVNQRSDFNR-------REGTQSRANTFRHHISKVTYGGIHGAYYTSTRTRRKDGD 67
Query: 197 GVTFEESKEADSSTRQASHRISRGLHGKGHSLARKLNSDGKVDTMQTLHNLNEDELVGFE 256
G+ EESKEAD +T +A+HRISRG++ KGHS+ RKLNS G V++ QTLHNL+EDEL GFE
Sbjct: 68 GMVVEESKEADKTTGEATHRISRGINDKGHSVTRKLNSSGGVESTQTLHNLDEDELSGFE 127
Query: 257 EEWKGKGQKYLPGWVGSIGADHSGQAQQARQGGWMLPS-------PEHSHPGGSTEARG 308
E WKG S+G H GGW+LPS + S G S A G
Sbjct: 128 EAWKGN---------SSLGK-HEFTGSDNSFGGWVLPSLDQIRRQTDQSQTGSSRSATG 176