Miyakogusa Predicted Gene

Lj4g3v1303750.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1303750.2 CUFF.48798.2
         (124 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G60800.1 | Symbols:  | DHHC-type zinc finger family protein |...   132   7e-32
AT4G22750.2 | Symbols:  | DHHC-type zinc finger family protein |...   105   7e-24
AT4G22750.1 | Symbols:  | DHHC-type zinc finger family protein |...   105   7e-24
AT4G22753.2 | Symbols: SMO1-3 | sterol 4-alpha methyl oxidase 1-...   104   1e-23
AT4G00840.1 | Symbols:  | DHHC-type zinc finger family protein |...    89   6e-19

>AT3G60800.1 | Symbols:  | DHHC-type zinc finger family protein |
           chr3:22467486-22469273 REVERSE LENGTH=307
          Length = 307

 Score =  132 bits (331), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 74/103 (71%)

Query: 22  ETALVTLSLLPYFMAFFTDEDISEPVTTLAVSFIAFVLNLAFVLSILGFMIMHISFVAAN 81
           ET LVTL L+P+F+AFF+DE+I     TLA +F+AFVLNLAF LS++GF+IMHIS VA N
Sbjct: 182 ETTLVTLVLMPHFIAFFSDEEIPGTPGTLATTFLAFVLNLAFALSVMGFLIMHISLVAGN 241

Query: 82  XXXXXXXXXXXXLKWHYDLGWRKNYEQVFGTDKRYWFIPAYSE 124
                        KW YDLG +KN+EQVFG DKRYW IP Y+E
Sbjct: 242 TTTIEAYEKKTTTKWRYDLGKKKNFEQVFGMDKRYWLIPGYTE 284


>AT4G22750.2 | Symbols:  | DHHC-type zinc finger family protein |
           chr4:11949366-11951335 REVERSE LENGTH=324
          Length = 324

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 3/105 (2%)

Query: 22  ETALVTLSLLPYFMAFFTDED--ISEPVTTLAVSFIAFVLNLAFVLSILGFMIMHISFVA 79
           ET +V +SLLP F+ FF+D D  I+    +LA SF+AFVLN+AF LS+LGF+IMHI  VA
Sbjct: 193 ETTVVAVSLLPIFLVFFSDGDGDITVSPGSLAASFVAFVLNIAFALSVLGFLIMHIMLVA 252

Query: 80  ANXXXXXXXXXXXXLKWHYDLGWRKNYEQVFGTDKRYWFIPAYSE 124
            N            + W Y++G + N+EQVFG+DK YWF+P Y+E
Sbjct: 253 RN-TTTIEAYEKHTVNWPYNVGRKTNFEQVFGSDKMYWFVPLYTE 296


>AT4G22750.1 | Symbols:  | DHHC-type zinc finger family protein |
           chr4:11949366-11951335 REVERSE LENGTH=302
          Length = 302

 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 3/105 (2%)

Query: 22  ETALVTLSLLPYFMAFFTDED--ISEPVTTLAVSFIAFVLNLAFVLSILGFMIMHISFVA 79
           ET +V +SLLP F+ FF+D D  I+    +LA SF+AFVLN+AF LS+LGF+IMHI  VA
Sbjct: 171 ETTVVAVSLLPIFLVFFSDGDGDITVSPGSLAASFVAFVLNIAFALSVLGFLIMHIMLVA 230

Query: 80  ANXXXXXXXXXXXXLKWHYDLGWRKNYEQVFGTDKRYWFIPAYSE 124
            N            + W Y++G + N+EQVFG+DK YWF+P Y+E
Sbjct: 231 RN-TTTIEAYEKHTVNWPYNVGRKTNFEQVFGSDKMYWFVPLYTE 274


>AT4G22753.2 | Symbols: SMO1-3 | sterol 4-alpha methyl oxidase 1-3 |
           chr4:11949366-11953609 REVERSE LENGTH=581
          Length = 581

 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 71/105 (67%), Gaps = 3/105 (2%)

Query: 22  ETALVTLSLLPYFMAFFTDED--ISEPVTTLAVSFIAFVLNLAFVLSILGFMIMHISFVA 79
           ET +V +SLLP F+ FF+D D  I+    +LA SF+AFVLN+AF LS+LGF+IMHI  VA
Sbjct: 450 ETTVVAVSLLPIFLVFFSDGDGDITVSPGSLAASFVAFVLNIAFALSVLGFLIMHIMLVA 509

Query: 80  ANXXXXXXXXXXXXLKWHYDLGWRKNYEQVFGTDKRYWFIPAYSE 124
            N            + W Y++G + N+EQVFG+DK YWF+P Y+E
Sbjct: 510 RN-TTTIEAYEKHTVNWPYNVGRKTNFEQVFGSDKMYWFVPLYTE 553


>AT4G00840.1 | Symbols:  | DHHC-type zinc finger family protein |
           chr4:355483-357105 REVERSE LENGTH=291
          Length = 291

 Score = 89.0 bits (219), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 65/105 (61%), Gaps = 3/105 (2%)

Query: 22  ETALVTLSLLPYFMAFFTD--EDISEPVTTLAVSFIAFVLNLAFVLSILGFMIMHISFVA 79
           ET L  + LLP F+ FF+   +  S P   LA   +AFVLN AFVLS+L F++MHIS ++
Sbjct: 166 ETMLDVIVLLPSFIEFFSQAIKHSSSP-GKLASLVLAFVLNFAFVLSLLCFVVMHISLLS 224

Query: 80  ANXXXXXXXXXXXXLKWHYDLGWRKNYEQVFGTDKRYWFIPAYSE 124
           +N            ++W YDLG +KN+EQVFG  K +W +P YS+
Sbjct: 225 SNTTSVEVHEKNGEVRWKYDLGKKKNFEQVFGKKKAFWLLPLYSK 269