Miyakogusa Predicted Gene

Lj4g3v1288460.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1288460.1 tr|A9SUD2|A9SUD2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_166600,57.14,0.16,seg,NULL; DUF2499,Uncharacterised
protein family Ycf49,NODE_3777_length_822_cov_60.150852.path2.1
         (168 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   165   1e-41
AT4G22830.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   164   3e-41

>AT4G22830.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13
           growth stages; CONTAINS InterPro DOMAIN/s: Protein of
           unknown function DUF2499 (InterPro:IPR019634); Has 319
           Blast hits to 317 proteins in 103 species: Archae - 0;
           Bacteria - 147; Metazoa - 0; Fungi - 0; Plants - 64;
           Viruses - 0; Other Eukaryotes - 108 (source: NCBI
           BLink). | chr4:11990296-11991325 REVERSE LENGTH=193
          Length = 193

 Score =  165 bits (417), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/105 (72%), Positives = 82/105 (78%)

Query: 62  QLQLHEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLLGGAF 121
            LQL EPSNALSLPTWAVHVSSVVEWI AMALVW+YGE+ GYE+WKGLSWGMVPLLGGA 
Sbjct: 82  SLQLSEPSNALSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGAL 141

Query: 122 CACTWHFFYNDESXXXXXXXXXXXXXXGNATMCIAAYRIYKSSRE 166
           CACTWHFFYNDES              GN T+CIAA+RI K S +
Sbjct: 142 CACTWHFFYNDESLEVLVALQAALTVFGNITLCIAAFRINKLSSK 186


>AT4G22830.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 20 plant
           structures; EXPRESSED DURING: 13 growth stages; CONTAINS
           InterPro DOMAIN/s: Protein of unknown function DUF2499
           (InterPro:IPR019634). | chr4:11990296-11991407 REVERSE
           LENGTH=201
          Length = 201

 Score =  164 bits (415), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 82/104 (78%)

Query: 63  LQLHEPSNALSLPTWAVHVSSVVEWIIAMALVWQYGEKSGYEAWKGLSWGMVPLLGGAFC 122
           LQL EPSNALSLPTWAVHVSSVVEWI AMALVW+YGE+ GYE+WKGLSWGMVPLLGGA C
Sbjct: 91  LQLSEPSNALSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALC 150

Query: 123 ACTWHFFYNDESXXXXXXXXXXXXXXGNATMCIAAYRIYKSSRE 166
           ACTWHFFYNDES              GN T+CIAA+RI K S +
Sbjct: 151 ACTWHFFYNDESLEVLVALQAALTVFGNITLCIAAFRINKLSSK 194