Miyakogusa Predicted Gene

Lj4g3v1287420.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1287420.2 tr|G7LGI2|G7LGI2_MEDTR Tyrosyl-DNA
phosphodiesterase OS=Medicago truncatula GN=MTR_8g095490 PE=4
SV=,72.16,0,Phospholipase D/nuclease,NULL; SMAD/FHA domain,SMAD/FHA
domain; FHA_DOMAIN,Forkhead-associated (FHA),CUFF.48767.2
         (1050 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07400.1 | Symbols:  | forkhead-associated domain-containing ...   767   0.0  
AT5G15170.1 | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-rela...    62   2e-09

>AT5G07400.1 | Symbols:  | forkhead-associated domain-containing
            protein / FHA domain-containing protein |
            chr5:2340814-2345321 FORWARD LENGTH=1084
          Length = 1084

 Score =  767 bits (1981), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/664 (57%), Positives = 470/664 (70%), Gaps = 15/664 (2%)

Query: 339  PGKNFYLNRLELMDXXXXXXXXXXXXXPELIYPVESISRMFIATFTSDIKWFLTYCKIPF 398
            PGKNFYLNRL+ ++             PEL++PVESI ++F+ATFTSDI WFLT C  P 
Sbjct: 362  PGKNFYLNRLQYIEQSSTGCQRVVSL-PELLHPVESIQQIFLATFTSDILWFLTCCDTPR 420

Query: 399  HLPVTIACHNTERCWSSRPDEREFVPYQDYPNLVVVCPPFPETIAFGNNRKKQGIACHHP 458
            HLPVTIACHN ERCWSS PD R  VP  +YPN+ +V PPFPE IAFG +R  +GIACHHP
Sbjct: 421  HLPVTIACHNAERCWSSNPDARTAVPLPNYPNVTMVYPPFPEEIAFGKDRTNRGIACHHP 480

Query: 459  KLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFPRGNSVDFASLFPKIDDGEIHSD 518
            KL ++QR+DSIRV+ITSANLV +QWN VTNT+WWQDFPR    D  SLF      E +  
Sbjct: 481  KLFILQRKDSIRVIITSANLVARQWNDVTNTVWWQDFPRRADPDLLSLFGHCQR-ETNHG 539

Query: 519  SKCDFAAQLAGFMASLVIDVPSQAQWITQLTKYDFEGATGHLVASVPGIHFYRTSVLLES 578
             K DF AQLAGF ASL+ DVPSQA WI + TKY+FE + GHLVASVPGIH Y+ S L ES
Sbjct: 540  LKPDFCAQLAGFAASLLTDVPSQAHWILEFTKYNFEHSAGHLVASVPGIHSYKPSYLTES 599

Query: 579  -----FQTSPFXXXXXXXXXXXXHLFRTVADSNSARLKTLAVFLRKSCRKANGWLEIVLR 633
                   +  F            +LFR+  DS  A+LK LA ++R++   + G LE+VLR
Sbjct: 600  GCSNTIFSEEFLGSVEASVVGLSYLFRSANDSTGAQLKRLASYIRRTRENSLGMLELVLR 659

Query: 634  RNSSVPADKNAVSVLIPNPDETSEGDYVQLGFLPRDVAKWISPLWDAGFFIFSGCVCPVE 693
            RN++VPAD NAV VL+PNPD+ S  D+VQLGFLPR +AKW+SPLWD GFF F G V   E
Sbjct: 660  RNTNVPADPNAVRVLVPNPDDDSRDDFVQLGFLPRSIAKWVSPLWDIGFFKFVGYVYRDE 719

Query: 694  ALAAALGENSKKVQLILNVSEGPHFQDMPKMMQSEQIVAFCSLIASIQRCYGLWRLQEVL 753
             L AA   +++KVQL+L+V +G    DM K++Q   +VA CSLIAS+QRC G+WRLQEVL
Sbjct: 720  VLGAASCRSNEKVQLVLHVLQGVSISDMSKLIQPYHVVALCSLIASLQRCTGIWRLQEVL 779

Query: 754  NRYRWPESLESEIIYGASSIGSSVNSKFLAAFSAAAGKKSLQHFDSEESDPEWGCWNANE 813
             RY+WPES ES+ +Y ASSIG S  + F A FS+AAGKK+LQHFDS+ESDPEWGCW+  E
Sbjct: 780  GRYKWPESQESDFVYSASSIGGSATTGFQADFSSAAGKKALQHFDSQESDPEWGCWSNRE 839

Query: 814  ELKNPSVWIIFPTIERVKNAYNGILPSRRMLCFAERTWQRLKTFDVLRDAIPHPCERIGH 873
            E + PS+ IIFPTIERVKN ++G+L SRR+LCF+E+TWQ+ +  +VL DA+P+P +R+GH
Sbjct: 840  EREAPSIKIIFPTIERVKNGHHGVLSSRRLLCFSEKTWQKWRHSNVLHDAVPNPQDRVGH 899

Query: 874  PMHTKVIRRCF--WSKGDAPSIGWVYCGSHNFSAAAWGRQISNPFGTKASEPKKVDPSVN 931
            PMH KV RR F       + S GWVY GSHNFSAAAWG+ IS        +      +V 
Sbjct: 900  PMHIKVARRLFTSTRGSRSSSFGWVYSGSHNFSAAAWGQTISRSSRNNQDQSNNAIRAVK 959

Query: 932  SGLHICNYELGIIFTFPP--IENNYCSEVQRTKLDDIILPFVVPAPKYGFRDRPATMQAM 989
              L +CNYELGI+F FPP   E + C   + +K+DDI+LPFVVPAPKYG+ D+PAT  AM
Sbjct: 960  K-LRVCNYELGIVFVFPPPHEETDSC---EGSKIDDIVLPFVVPAPKYGWSDKPATGLAM 1015

Query: 990  REAM 993
            REA 
Sbjct: 1016 REAF 1019



 Score =  135 bits (340), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/257 (38%), Positives = 132/257 (51%), Gaps = 35/257 (13%)

Query: 16  QRTTVVLNHFDVPLISSASNGVVSPCDSMRLHADYPYSIGRKPRD--CDFVFHDRRVSKR 73
           ++  + +++   PLIS +S     P +   + +D PY+IGR   D  CDFV     +S++
Sbjct: 7   EKVVIRIHNIGTPLISGSSG---LPLELFHIQSDRPYTIGRSSSDGFCDFVIDHSSISRK 63

Query: 74  HGQIFFDGSLRKLYLLSGVLSNSDCSTITTNAHLVHEFRKRVVMGSRGSDRIPFREASNG 133
           H QI FD    KLY+  GV+     S     + +  EFR+R+V G      + FR + NG
Sbjct: 64  HCQILFDSQSHKLYIFDGVIHLPSGSF----SQVYDEFRRRLV-GVEDLGNLKFRASLNG 118

Query: 134 VFVNGVEIGKGMAVELSAGDRVSLVCGNQSGSCDVGNRIGFVVQRIVLEGCEWDRDGGGD 193
           V+VN V + K    E+S  D V   CG +   C  G R+GFVVQ IV EG    RD    
Sbjct: 119 VYVNRVRVRKSKVQEVSIDDEVLFFCGKEGLCCKDG-RVGFVVQEIVFEG----RDASIV 173

Query: 194 SVEIDGLTFSGHSQ----SGKRSKRVFA-----VKVGVS-----RCEGVVGRARFLLDKC 239
           SV       SGHS+    SGKRSKRVFA     +   VS     +  GVV R   L+  C
Sbjct: 174 SVS------SGHSRGTFSSGKRSKRVFAPMENEINSPVSGFYPPKAVGVVERVNSLVSYC 227

Query: 240 RDILLSDDPLSCISRAV 256
           R IL SDDPLSC+  ++
Sbjct: 228 RHILKSDDPLSCLRLSI 244


>AT5G15170.1 | Symbols: TDP1 | tyrosyl-DNA phosphodiesterase-related
           | chr5:4926300-4929307 REVERSE LENGTH=605
          Length = 605

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 80/198 (40%), Gaps = 38/198 (19%)

Query: 379 FIATFTSDIKWFLTYCKIPFHLPVTIACHNTERCWSSRPDEREFVPYQDYPNLVVVCPPF 438
            ++ +  DI W ++ C    ++P  +  H            +E++  +   N ++  P  
Sbjct: 175 ILSNYMVDIDWLMSACPKLANIPQVMVIHGEGD------GRQEYIQRKKPANWILHKPRL 228

Query: 439 PETIAFGNNRKKQGIACHHPKLIVVQREDSIRVVITSANLVEKQWNYVTNTIWWQDFPRG 498
           P  I+FG          HH K I +     +RVV+ +ANL+   WN  +  +W QDFP  
Sbjct: 229 P--ISFG---------THHSKAIFLVYPRGVRVVVHTANLIHVDWNNKSQGLWMQDFPW- 276

Query: 499 NSVDFASLFPKIDDGEIHSDSKCDFAAQLAGFMASL-----VIDVPSQAQWITQ---LTK 550
                     K DD +      C F   L  ++  L       ++P +           K
Sbjct: 277 ----------KDDDKD--PPKGCGFEGDLIDYLNVLKWPEFTANLPGRGNVKINAAFFKK 324

Query: 551 YDFEGATGHLVASVPGIH 568
           +D+  AT  L+ASVPG H
Sbjct: 325 FDYSDATVRLIASVPGYH 342