Miyakogusa Predicted Gene
- Lj4g3v1287320.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1287320.1 NODE_52417_length_1520_cov_123.377632.path2.1
(309 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 425 e-119
AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 425 e-119
AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 425 e-119
AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 419 e-117
AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A | chr4:12007157... 418 e-117
AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71777... 415 e-116
AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-71776... 401 e-112
AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 69 5e-12
AT5G59400.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 69 6e-12
>AT4G22890.2 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/325 (66%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 1 MASKLASTLTYQRPFTATTQPTSSISTP-------RAHLVQFNGRRNVCXXXXXXXXXSP 53
M SK+ +LT R F+A ++ SS +P R Q + +++ +
Sbjct: 1 MGSKMLFSLTSPRLFSAVSRKPSSSFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLPA- 59
Query: 54 KASADQQGKVEKDAVDS---------IKEKKSIGELEQDFLQALQAFYYEGKAIMSNEEF 104
KA+ +Q G V D VDS EKK+IGE+EQ+FLQALQ+FYY+GKAIMSNEEF
Sbjct: 60 KATTEQSGPVGGDNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEF 119
Query: 105 DNLKEELMWEGSSVVMLSSDEQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAE 164
DNLKEELMWEGSSVVMLSSDEQ+FLEA+M YVSG PI++D+EYD+LKL+LK++GS+IV+E
Sbjct: 120 DNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSE 179
Query: 165 GPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLIEIPEPYSF 224
GPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI ++E+PEPYSF
Sbjct: 180 GPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSF 239
Query: 225 ILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVK 284
I TWFAAVP IV+LA SIT II DFLILKGPCPNCGTENTSFFGTILSISSG TN VK
Sbjct: 240 IFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVK 299
Query: 285 CVNCGTAMVYDSSTRLITLPEGSNA 309
C NCGTAMVYDS +RLITLPEGS A
Sbjct: 300 CTNCGTAMVYDSGSRLITLPEGSQA 324
>AT4G22890.3 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/325 (66%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 1 MASKLASTLTYQRPFTATTQPTSSISTP-------RAHLVQFNGRRNVCXXXXXXXXXSP 53
M SK+ +LT R F+A ++ SS +P R Q + +++ +
Sbjct: 1 MGSKMLFSLTSPRLFSAVSRKPSSSFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLPA- 59
Query: 54 KASADQQGKVEKDAVDS---------IKEKKSIGELEQDFLQALQAFYYEGKAIMSNEEF 104
KA+ +Q G V D VDS EKK+IGE+EQ+FLQALQ+FYY+GKAIMSNEEF
Sbjct: 60 KATTEQSGPVGGDNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEF 119
Query: 105 DNLKEELMWEGSSVVMLSSDEQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAE 164
DNLKEELMWEGSSVVMLSSDEQ+FLEA+M YVSG PI++D+EYD+LKL+LK++GS+IV+E
Sbjct: 120 DNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSE 179
Query: 165 GPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLIEIPEPYSF 224
GPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI ++E+PEPYSF
Sbjct: 180 GPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSF 239
Query: 225 ILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVK 284
I TWFAAVP IV+LA SIT II DFLILKGPCPNCGTENTSFFGTILSISSG TN VK
Sbjct: 240 IFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVK 299
Query: 285 CVNCGTAMVYDSSTRLITLPEGSNA 309
C NCGTAMVYDS +RLITLPEGS A
Sbjct: 300 CTNCGTAMVYDSGSRLITLPEGSQA 324
>AT4G22890.1 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=324
Length = 324
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/325 (66%), Positives = 254/325 (78%), Gaps = 17/325 (5%)
Query: 1 MASKLASTLTYQRPFTATTQPTSSISTP-------RAHLVQFNGRRNVCXXXXXXXXXSP 53
M SK+ +LT R F+A ++ SS +P R Q + +++ +
Sbjct: 1 MGSKMLFSLTSPRLFSAVSRKPSSSFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLPA- 59
Query: 54 KASADQQGKVEKDAVDS---------IKEKKSIGELEQDFLQALQAFYYEGKAIMSNEEF 104
KA+ +Q G V D VDS EKK+IGE+EQ+FLQALQ+FYY+GKAIMSNEEF
Sbjct: 60 KATTEQSGPVGGDNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEF 119
Query: 105 DNLKEELMWEGSSVVMLSSDEQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAE 164
DNLKEELMWEGSSVVMLSSDEQ+FLEA+M YVSG PI++D+EYD+LKL+LK++GS+IV+E
Sbjct: 120 DNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSE 179
Query: 165 GPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLIEIPEPYSF 224
GPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI ++E+PEPYSF
Sbjct: 180 GPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSF 239
Query: 225 ILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVK 284
I TWFAAVP IV+LA SIT II DFLILKGPCPNCGTENTSFFGTILSISSG TN VK
Sbjct: 240 IFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVK 299
Query: 285 CVNCGTAMVYDSSTRLITLPEGSNA 309
C NCGTAMVYDS +RLITLPEGS A
Sbjct: 300 CTNCGTAMVYDSGSRLITLPEGSQA 324
>AT4G22890.4 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=321
Length = 321
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/325 (65%), Positives = 253/325 (77%), Gaps = 20/325 (6%)
Query: 1 MASKLASTLTYQRPFTATTQPTSSISTP-------RAHLVQFNGRRNVCXXXXXXXXXSP 53
M SK+ +LT R F+A ++ SS +P R Q + +++ +
Sbjct: 1 MGSKMLFSLTSPRLFSAVSRKPSSSFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLPA- 59
Query: 54 KASADQQGKVEKDAVDS---------IKEKKSIGELEQDFLQALQAFYYEGKAIMSNEEF 104
KA+ +Q G D VDS EKK+IGE+EQ+FLQALQ+FYY+GKAIMSNEEF
Sbjct: 60 KATTEQSGG---DNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEF 116
Query: 105 DNLKEELMWEGSSVVMLSSDEQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAE 164
DNLKEELMWEGSSVVMLSSDEQ+FLEA+M YVSG PI++D+EYD+LKL+LK++GS+IV+E
Sbjct: 117 DNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSE 176
Query: 165 GPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLIEIPEPYSF 224
GPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI ++E+PEPYSF
Sbjct: 177 GPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSF 236
Query: 225 ILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVK 284
I TWFAAVP IV+LA SIT II DFLILKGPCPNCGTENTSFFGTILSISSG TN VK
Sbjct: 237 IFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVK 296
Query: 285 CVNCGTAMVYDSSTRLITLPEGSNA 309
C NCGTAMVYDS +RLITLPEGS A
Sbjct: 297 CTNCGTAMVYDSGSRLITLPEGSQA 321
>AT4G22890.5 | Symbols: PGR5-LIKE A | PGR5-LIKE A |
chr4:12007157-12009175 FORWARD LENGTH=322
Length = 322
Score = 418 bits (1074), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/325 (65%), Positives = 253/325 (77%), Gaps = 19/325 (5%)
Query: 1 MASKLASTLTYQRPFTATTQPTSSISTP-------RAHLVQFNGRRNVCXXXXXXXXXSP 53
M SK+ +LT R F+A ++ SS +P R Q + +++ +
Sbjct: 1 MGSKMLFSLTSPRLFSAVSRKPSSSFSPSPPSPSSRTQWTQLSPGKSISLRRRVFLLPA- 59
Query: 54 KASADQQGKVEKDAVDS---------IKEKKSIGELEQDFLQALQAFYYEGKAIMSNEEF 104
KA+ +Q V D VDS EKK+IGE+EQ+FLQALQ+FYY+GKAIMSNEEF
Sbjct: 60 KATTEQS--VGGDNVDSNVLPYCSINKAEKKTIGEMEQEFLQALQSFYYDGKAIMSNEEF 117
Query: 105 DNLKEELMWEGSSVVMLSSDEQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAE 164
DNLKEELMWEGSSVVMLSSDEQ+FLEA+M YVSG PI++D+EYD+LKL+LK++GS+IV+E
Sbjct: 118 DNLKEELMWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLKIDGSDIVSE 177
Query: 165 GPRCSIRSRKVYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLIEIPEPYSF 224
GPRCS+RS+KVYSDL++DY KM LLNVPATVVALGLFFFLDD+TGFEI ++E+PEPYSF
Sbjct: 178 GPRCSLRSKKVYSDLAVDYFKMLLLNVPATVVALGLFFFLDDITGFEITYIMELPEPYSF 237
Query: 225 ILTWFAAVPFIVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVK 284
I TWFAAVP IV+LA SIT II DFLILKGPCPNCGTENTSFFGTILSISSG TN VK
Sbjct: 238 IFTWFAAVPVIVYLALSITKLIIKDFLILKGPCPNCGTENTSFFGTILSISSGGKTNTVK 297
Query: 285 CVNCGTAMVYDSSTRLITLPEGSNA 309
C NCGTAMVYDS +RLITLPEGS A
Sbjct: 298 CTNCGTAMVYDSGSRLITLPEGSQA 322
>AT4G11960.1 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177709
REVERSE LENGTH=313
Length = 313
Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/315 (66%), Positives = 246/315 (78%), Gaps = 12/315 (3%)
Query: 5 LASTLTYQRPFTATTQPTSSISTPRAHL-VQFNGRRNVCXXXXXXXXXSPKASADQQGKV 63
+A TLT R F+A ++ + S+ R F R++ KAS DQ G+V
Sbjct: 1 MAFTLTIPR-FSAISRKPITCSSSRTQCPAPFTHGRSI-SLRRRLTLLPLKASTDQSGQV 58
Query: 64 EKDAVDSI---------KEKKSIGELEQDFLQALQAFYYEGKAIMSNEEFDNLKEELMWE 114
+ VDS EK++IGE+EQ+FLQA+Q+FYYEGKAIMSNEEFDNLKEELMWE
Sbjct: 59 GGEEVDSKILPYCSINKNEKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWE 118
Query: 115 GSSVVMLSSDEQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAEGPRCSIRSRK 174
GSSVVMLSSDEQ+FLEA+M YVSG PI+SD+EYD+LK++LKM+GSEIV EGPRCS+RS+K
Sbjct: 119 GSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKK 178
Query: 175 VYSDLSIDYLKMFLLNVPATVVALGLFFFLDDVTGFEINSLIEIPEPYSFILTWFAAVPF 234
VYSDL+IDY KMFLLNVPATVVALGLFFFLDD+TGFEI L+E+PEP+SFI TWFAAVP
Sbjct: 179 VYSDLAIDYFKMFLLNVPATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPA 238
Query: 235 IVWLAQSITNAIINDFLILKGPCPNCGTENTSFFGTILSISSGNSTNKVKCVNCGTAMVY 294
IV+LA S+T I+ DFLILKGPCPNCGTEN SFFGTILSI + ++TN VKC CGT MVY
Sbjct: 239 IVYLALSLTKLILKDFLILKGPCPNCGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVY 298
Query: 295 DSSTRLITLPEGSNA 309
DS +RLITLPEG A
Sbjct: 299 DSGSRLITLPEGGKA 313
>AT4G11960.2 | Symbols: PGRL1B | PGR5-like B | chr4:7175340-7177612
REVERSE LENGTH=296
Length = 296
Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust.
Identities = 187/237 (78%), Positives = 215/237 (90%)
Query: 73 EKKSIGELEQDFLQALQAFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEAA 132
EK++IGE+EQ+FLQA+Q+FYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQ+FLEA+
Sbjct: 60 EKRTIGEMEQEFLQAMQSFYYEGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEAS 119
Query: 133 MGYVSGKPIMSDKEYDELKLRLKMEGSEIVAEGPRCSIRSRKVYSDLSIDYLKMFLLNVP 192
M YVSG PI+SD+EYD+LK++LKM+GSEIV EGPRCS+RS+KVYSDL+IDY KMFLLNVP
Sbjct: 120 MAYVSGNPILSDEEYDKLKMKLKMDGSEIVCEGPRCSLRSKKVYSDLAIDYFKMFLLNVP 179
Query: 193 ATVVALGLFFFLDDVTGFEINSLIEIPEPYSFILTWFAAVPFIVWLAQSITNAIINDFLI 252
ATVVALGLFFFLDD+TGFEI L+E+PEP+SFI TWFAAVP IV+LA S+T I+ DFLI
Sbjct: 180 ATVVALGLFFFLDDITGFEITYLLELPEPFSFIFTWFAAVPAIVYLALSLTKLILKDFLI 239
Query: 253 LKGPCPNCGTENTSFFGTILSISSGNSTNKVKCVNCGTAMVYDSSTRLITLPEGSNA 309
LKGPCPNCGTEN SFFGTILSI + ++TN VKC CGT MVYDS +RLITLPEG A
Sbjct: 240 LKGPCPNCGTENVSFFGTILSIPNDSNTNNVKCSGCGTEMVYDSGSRLITLPEGGKA 296
>AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: PGR5-like B
(TAIR:AT4G11960.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr5:23957756-23959518 FORWARD LENGTH=301
Length = 301
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 125 EQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAEGPRCSIRSRKVYSD------ 178
E + +A Y +GKP++ D +D ++L+L+ GS+ V + PRCS+ + Y+D
Sbjct: 75 EALYRQAKDAYYNGKPLIVDDMFDRVELKLRWYGSKSVVKYPRCSLLRQSTYADAEDDAS 134
Query: 179 ----LSIDYLKMFLLNVPA----TVVALGLFFFLDD-----VTGFEINSLIEIPEPYSFI 225
L+ ++ +FL A T+ +GL + D V +++S + I ++ I
Sbjct: 135 QVLLLATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDSGLVYSSQLSSSVPILSKFNGI 194
Query: 226 LTWFAAVPFIVWLAQSITNAI----INDFLILKGPCPNCGTENTSFFGTILSISSGNSTN 281
L F +A S + ND LKG CPNCG E F + S S S +
Sbjct: 195 LLSVLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNCGEE---VFAFVRSDQSNRSAH 251
Query: 282 KVKCVNC 288
K C C
Sbjct: 252 KADCHVC 258
>AT5G59400.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: PGR5-like B
(TAIR:AT4G11960.1); Has 97 Blast hits to 97 proteins in
19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0
(source: NCBI BLink). | chr5:23957756-23959518 FORWARD
LENGTH=299
Length = 299
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 26/187 (13%)
Query: 125 EQKFLEAAMGYVSGKPIMSDKEYDELKLRLKMEGSEIVAEGPRCSIRSRKVYSD------ 178
E + +A Y +GKP++ D +D ++L+L+ GS+ V + PRCS+ + Y+D
Sbjct: 75 EALYRQAKDAYYNGKPLIVDDMFDRVELKLRWYGSKSVVKYPRCSLLRQSTYADAEDDAS 134
Query: 179 ----LSIDYLKMFLLNVPA----TVVALGLFFFLDD-----VTGFEINSLIEIPEPYSFI 225
L+ ++ +FL A T+ +GL + D V +++S + I ++ I
Sbjct: 135 QVLLLATVWIMIFLFGSSACVLPTIYGVGLVYGGDPFDSGLVYSSQLSSSVPILSKFNGI 194
Query: 226 LTWFAAVPFIVWLAQSITNAI----INDFLILKGPCPNCGTENTSFFGTILSISSGNSTN 281
L F +A S + ND LKG CPNCG E F + S S S +
Sbjct: 195 LLSVLGPAFGYPIASSAVRVLKGLWRNDLTALKGDCPNCGEE---VFAFVRSDQSNRSAH 251
Query: 282 KVKCVNC 288
K C C
Sbjct: 252 KADCHVC 258