Miyakogusa Predicted Gene
- Lj4g3v1286210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1286210.1 tr|B9GVG0|B9GVG0_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_757344 PE=4
SV=1,59.32,0.00000000000006,HMA, heavy metal-associated domain,Heavy
metal-associated domain, HMA; HMA_2,Heavy metal-associated
,CUFF.48758.1
(111 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35730.1 | Symbols: | Heavy metal transport/detoxification s... 70 4e-13
AT2G28660.1 | Symbols: | Chloroplast-targeted copper chaperone ... 53 3e-08
AT5G02600.1 | Symbols: NAKR1 | Heavy metal transport/detoxificat... 52 7e-08
AT5G02600.2 | Symbols: NAKR1 | Heavy metal transport/detoxificat... 52 7e-08
AT3G56240.1 | Symbols: CCH | copper chaperone | chr3:20863460-20... 49 5e-07
AT2G37390.2 | Symbols: NAKR2 | Chloroplast-targeted copper chape... 49 8e-07
AT2G37390.1 | Symbols: NAKR2 | Chloroplast-targeted copper chape... 49 8e-07
AT1G66240.1 | Symbols: ATX1, ATATX1 | homolog of anti-oxidant 1 ... 48 2e-06
AT3G53530.1 | Symbols: NAKR3 | Chloroplast-targeted copper chape... 47 2e-06
>AT2G35730.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr2:15020559-15021475 REVERSE
LENGTH=115
Length = 115
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 10 MKPDENEYRSLLYMANLTLPLFQVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKK 69
MK R+L+ L+LP FQV+ I A++ C C+ RVS++VSKMTG+ EY +D+ KK
Sbjct: 1 MKEPMMRRRTLMLCEKLSLPSFQVIEINADVGCVACQDRVSKIVSKMTGIEEYVVDLKKK 60
Query: 70 EVTLKGDFIAHCNFKDENLRSIT-----------LKSATIRLKSMFS-CLN 108
V +GDF + ++ + L+ I L+S+FS CL
Sbjct: 61 LVMARGDFRPRLVSSQQQVKDVVSQTPSQNAKRLLRPLKIFLRSIFSLCLR 111
>AT2G28660.1 | Symbols: | Chloroplast-targeted copper chaperone
protein | chr2:12295419-12296944 FORWARD LENGTH=265
Length = 265
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 32 QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKG 75
QVVV+ ++ C GC G+V + +SKM G+T YTID++ K+VT+ G
Sbjct: 183 QVVVLRVSIHCKGCEGKVRKHISKMEGVTSYTIDLATKKVTVVG 226
>AT5G02600.1 | Symbols: NAKR1 | Heavy metal transport/detoxification
superfamily protein | chr5:585713-586855 REVERSE
LENGTH=319
Length = 319
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 32 QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGD 76
QVVV+ ++ C GC G+V + +SK+ G+T Y ID + K+VT+ GD
Sbjct: 250 QVVVLRVSLHCKGCAGKVKKHLSKLKGVTSYNIDFAAKKVTVTGD 294
>AT5G02600.2 | Symbols: NAKR1 | Heavy metal transport/detoxification
superfamily protein | chr5:584486-586855 REVERSE
LENGTH=319
Length = 319
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 32/45 (71%)
Query: 32 QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGD 76
QVVV+ ++ C GC G+V + +SK+ G+T Y ID + K+VT+ GD
Sbjct: 250 QVVVLRVSLHCKGCAGKVKKHLSKLKGVTSYNIDFAAKKVTVTGD 294
>AT3G56240.1 | Symbols: CCH | copper chaperone |
chr3:20863460-20864402 REVERSE LENGTH=121
Length = 121
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 30 LFQVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGDFIAHCNFK 84
+ Q VV+ M C GC G V+RV+ KM G+ + ID+ +++VT+KG+ F+
Sbjct: 1 MAQTVVLKVGMSCQGCVGAVNRVLGKMEGVESFDIDIKEQKVTVKGNVEPEAVFQ 55
>AT2G37390.2 | Symbols: NAKR2 | Chloroplast-targeted copper
chaperone protein | chr2:15694300-15695461 FORWARD
LENGTH=258
Length = 258
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 32 QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGDF 77
QVVV+ ++ C GC G+V + +++M G+T + ID + K+VT+ GD
Sbjct: 180 QVVVLKVSLHCRGCEGKVRKHLARMQGVTSFNIDFAAKKVTVTGDI 225
>AT2G37390.1 | Symbols: NAKR2 | Chloroplast-targeted copper
chaperone protein | chr2:15694300-15695461 FORWARD
LENGTH=259
Length = 259
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 32 QVVVITANMECNGCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGDF 77
QVVV+ ++ C GC G+V + +++M G+T + ID + K+VT+ GD
Sbjct: 181 QVVVLKVSLHCRGCEGKVRKHLARMQGVTSFNIDFAAKKVTVTGDI 226
>AT1G66240.1 | Symbols: ATX1, ATATX1 | homolog of anti-oxidant 1 |
chr1:24686445-24687327 REVERSE LENGTH=106
Length = 106
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 17 YRSLLYMANLTLPLFQV------------VVITANMECNGCRGRVSRVVSKMTGLTEYTI 64
++++ Y +L LFQ VV+ M C GC G V RV+ KM G+ + +
Sbjct: 6 FQAVSYQNTASLSLFQALSVVESKAMSQTVVLRVAMTCEGCVGAVKRVLGKMEGVESFDV 65
Query: 65 DVSKKEVTLKGD 76
D+ +++VT+KG+
Sbjct: 66 DIKEQKVTVKGN 77
>AT3G53530.1 | Symbols: NAKR3 | Chloroplast-targeted copper
chaperone protein | chr3:19845199-19846583 FORWARD
LENGTH=247
Length = 247
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 34/48 (70%), Gaps = 2/48 (4%)
Query: 32 QVVVITANMECN--GCRGRVSRVVSKMTGLTEYTIDVSKKEVTLKGDF 77
QVVV+ ++ C+ GC+G+V + +SKM G+T + ID + K+VT+ GD
Sbjct: 168 QVVVLRVSLHCHCRGCQGKVKKHLSKMQGVTSFNIDFASKKVTVTGDI 215