Miyakogusa Predicted Gene

Lj4g3v1260340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1260340.1 tr|I1MGV6|I1MGV6_SOYBN 60S ribosomal protein L27
OS=Glycine max GN=Gma.55267 PE=3 SV=1,88.15,0,RIBOSOMAL_L27E,Ribosomal
protein L27e, conserved site; no description,Translation protein
SH3-like, ,CUFF.48726.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G22230.1 | Symbols:  | Ribosomal L27e protein family | chr3:7...   191   2e-49
AT4G15000.1 | Symbols:  | Ribosomal L27e protein family | chr4:8...   191   2e-49
AT2G32220.1 | Symbols:  | Ribosomal L27e protein family | chr2:1...   180   2e-46
AT4G15000.2 | Symbols:  | Ribosomal L27e protein family | chr4:8...   166   4e-42

>AT3G22230.1 | Symbols:  | Ribosomal L27e protein family |
           chr3:7844136-7844543 REVERSE LENGTH=135
          Length = 135

 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 102/135 (75%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLK NKAVILLQGRYAGKKAVI+K+FDDGT  R YGHCLVAG+KKYPSKVI      
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVK F+KLVNYQHLMPTRYTLDVDLK+  + +AL SKD+KVTAL          
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>AT4G15000.1 | Symbols:  | Ribosomal L27e protein family |
           chr4:8571896-8572303 FORWARD LENGTH=135
          Length = 135

 Score =  191 bits (484), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/135 (68%), Positives = 101/135 (74%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLK NKAVILLQGRYAGKKAVI+K+FDDG   RPYGHCLVAG+KKYPSKVI      
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVK F+KLVNYQHLMPTRYTLDVDLK+  + +AL SKD+KV AL          
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>AT2G32220.1 | Symbols:  | Ribosomal L27e protein family |
           chr2:13678945-13679352 FORWARD LENGTH=135
          Length = 135

 Score =  180 bits (457), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 88/135 (65%), Positives = 100/135 (74%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVK +KP KAVILLQGRY GKKAVIVK+FDDGT  + YGHCLVAG+KKYPSKVI      
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTALXXXXXXXXXX 120
                SRVK F K++NYQH+MPTRYTLD+DLK+ VS +A+ SKD+KVTAL          
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 XXXGKNRWFFTKLRF 135
              GKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>AT4G15000.2 | Symbols:  | Ribosomal L27e protein family |
           chr4:8571896-8572387 FORWARD LENGTH=131
          Length = 131

 Score =  166 bits (420), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 81/110 (73%), Positives = 89/110 (80%)

Query: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTHGRPYGHCLVAGIKKYPSKVIXXXXXX 60
           MVKFLK NKAVILLQGRYAGKKAVI+K+FDDG   RPYGHCLVAG+KKYPSKVI      
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  XXXXXSRVKAFMKLVNYQHLMPTRYTLDVDLKDAVSTNALVSKDQKVTAL 110
                SRVK F+KLVNYQHLMPTRYTLDVDLK+  + +AL SKD+KV AL
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAAL 110