Miyakogusa Predicted Gene

Lj4g3v1259130.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1259130.1 tr|B9H0P1|B9H0P1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_712927 PE=4
SV=1,44.83,8e-19,coiled-coil,NULL,CUFF.48716.1
         (96 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11760.1 | Symbols: MED32 | MED32; Has 41 Blast hits to 40 pr...    81   1e-16

>AT1G11760.1 | Symbols: MED32 | MED32; Has 41 Blast hits to 40
          proteins in 14 species: Archae - 0; Bacteria - 0;
          Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr1:3972356-3972811 REVERSE LENGTH=151
          Length = 151

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 48/62 (77%)

Query: 1  MDSVVDSLNNAYQDLVDAAANVLEAKENVGALETTATDTAPENFKQKLILFKVACDQAEE 60
          MD++VDSLN AY+  V A+A VLE+KE+ G  +   TDTA ENFK+K  LF+VACDQAEE
Sbjct: 1  MDNIVDSLNKAYEKFVLASAGVLESKESAGGQKALLTDTALENFKEKWELFRVACDQAEE 60

Query: 61 FV 62
          FV
Sbjct: 61 FV 62