Miyakogusa Predicted Gene

Lj4g3v1259110.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1259110.1 tr|G7JIW4|G7JIW4_MEDTR Asparaginyl-tRNA
synthetase OS=Medicago truncatula GN=MTR_4g100920 PE=3
SV=1,82.11,0,asnS: asparagine--tRNA ligase,Asparagine-tRNA ligase,
class IIb; tRNA-synt_2,Aminoacyl-tRNA syntheta,CUFF.48715.1
         (375 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17300.1 | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRN...   490   e-139
AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and bioti...   252   3e-67
AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II am...   236   3e-62
AT3G07420.1 | Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 | asparagi...   179   4e-45
AT1G68420.1 | Symbols:  | Class II aaRS and biotin synthetases s...    90   2e-18

>AT4G17300.1 | Symbols: NS1, OVA8, ATNS1 | Class II aminoacyl-tRNA
           and biotin synthetases superfamily protein |
           chr4:9681558-9684833 FORWARD LENGTH=567
          Length = 567

 Score =  490 bits (1262), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 238/318 (74%), Positives = 260/318 (81%), Gaps = 4/318 (1%)

Query: 61  KVSKFRKKLKIADVK--AXXXXXXXXXXXXXXGWVRTLRPQATVTFLEINDGSCLSNMQC 118
           KV +FRKKL+IA+VK  A              GWVRTLR Q++VTF+EINDGSCLSN+QC
Sbjct: 84  KVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSNLQC 143

Query: 119 VLDPEVEGYDQV--GLITTGASVWVQGVVVESQGAXXXXXXXXXXXXXXXXSDPSFPIQK 176
           V+  + EGYDQV  G I TGASV VQG +V SQG                  D S+PIQK
Sbjct: 144 VMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYPIQK 203

Query: 177 KRVSNEFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEGA 236
           KRVS EFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GFVWV+SPIITASDCEGA
Sbjct: 204 KRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCEGA 263

Query: 237 GEQFCVTTLIPSSHESADSPIDAIPKINDKLIDWSQDFFGKPAFLTVSGQLNAETYATAL 296
           GEQFCVTTLIPSSHE+ D+ IDAIPK    LIDWSQDFFGKPAFLTVSGQLN ETYATAL
Sbjct: 264 GEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYATAL 323

Query: 297 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRYILDNCKE 356
           SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL+DDMACATAYLQ+V++Y+LDNCKE
Sbjct: 324 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYVVKYVLDNCKE 383

Query: 357 DMEFFNTWTDKGIIDRLS 374
           DMEFF+TW +KGII RLS
Sbjct: 384 DMEFFDTWIEKGIIRRLS 401


>AT1G70980.1 | Symbols: SYNC3 | Class II aminoacyl-tRNA and biotin
           synthetases superfamily protein | chr1:26762339-26764394
           FORWARD LENGTH=571
          Length = 571

 Score =  252 bits (643), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 144/352 (40%), Positives = 193/352 (54%), Gaps = 70/352 (19%)

Query: 91  GWVRTLRPQA--TVTFLEINDGSCLSNMQCVLDPEVEGYDQVGLITTGASVWVQGVVV-- 146
           GWV+T R Q   T  FLE+NDGSC +N+Q ++D  +  YD   L+ TG  V V GV+   
Sbjct: 54  GWVKTGRQQGKGTFAFLEVNDGSCPANLQVMVDSSL--YDLSRLVATGTCVTVDGVLKIP 111

Query: 147 -ESQGAXXXXXXXXXXXXXXXXSDPS-FPIQKKRVSNEFLRTKAHLRPRTNTFGAVARVR 204
            E +G                  DP+ +P+ K +++ EFLR   HLR RTN   AVAR+R
Sbjct: 112 PEGKGLKQSIELSVETVIAVGTVDPTTYPLPKTKLTPEFLRDVLHLRSRTNLISAVARIR 171

Query: 205 NALAYATHKFFQENGFVWVSSPII----------------------------------TA 230
           NALA+ATH FFQE+ F+++ +PII                                  T 
Sbjct: 172 NALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINHTERVEQDLIDNPPPTE 231

Query: 231 SDCEGA-------GEQFCVTTLIPSSHESADSPI--------------------DAIPKI 263
           +D E A       GE      +  +S E   + +                      +PK 
Sbjct: 232 ADVEAARLIVKERGEAVAQLKVAKASKEEITASVAQLSVAKASLAHVEERLRLKPGLPK- 290

Query: 264 NDKLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMI 323
           ND  ID+S DFFG+ AFLTVSGQL  ETYA ALS VYTFGPTFRAENS+TSRHLAEFWM+
Sbjct: 291 NDGKIDYSNDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAEFWMV 350

Query: 324 EPELAFADLNDDMACATAYLQFVIRYILDNCKEDMEFFNTWTDKGIIDRLSV 375
           EPE+AFAD++DDM CA AY++++ ++++D C +DME  +   D+G   RL++
Sbjct: 351 EPEIAFADIHDDMNCAEAYVKYMCKWLMDKCGDDMELMDKNVDEGCTKRLNM 402


>AT5G56680.1 | Symbols: SYNC1, EMB2755, SYNC1 ARATH | Class II
           aminoacyl-tRNA and biotin synthetases superfamily
           protein | chr5:22936645-22938841 FORWARD LENGTH=572
          Length = 572

 Score =  236 bits (601), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 139/351 (39%), Positives = 190/351 (54%), Gaps = 68/351 (19%)

Query: 91  GWVRTLRPQA--TVTFLEINDGSCLSNMQCVLDPEVEGYDQVGLITTGASVWVQGVVV-- 146
           GWV++ R Q   T +FL +NDGSC +N+Q ++DP +  YD   L+ TG  V V GV+   
Sbjct: 57  GWVKSGRDQGKRTFSFLAVNDGSCPANLQVMVDPSL--YDVSNLVATGTCVTVDGVLKVP 114

Query: 147 -ESQGAXXXXXXXXXXXXXXXXSDPS-FPIQKKRVSNEFLRTKAHLRPRTNTFGAVARVR 204
            + +G                  D S +P+ K +++ E LR   HLR RTN+  AVAR+R
Sbjct: 115 PKGKGTQQQIELNVVKVIDVGTVDASKYPLPKTKLTLETLRDVLHLRSRTNSISAVARIR 174

Query: 205 NALAYATHKFFQENGFVW----------------------------------VSSPIITA 230
           NALA+ATH FFQE+ F++                                  + +P  T 
Sbjct: 175 NALAFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQATTLINYTERLEQDLIDNPPPTE 234

Query: 231 SDCEGAG----EQFCVTTLIPSSHESADSPIDAIPKIN---------------------- 264
           +D E A     E+  V   + ++  S ++   A+ ++                       
Sbjct: 235 ADVEAARLIVIERGNVVAELKAAKASKEAITAAVAELKIAKETFAHIDERSRLRPGLPKK 294

Query: 265 DKLIDWSQDFFGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIE 324
           D  ID+S+DFFG+ AFLTVSGQL  ETYA ALS+VYTFGPTFRAENS+TSRHLAEFWM+E
Sbjct: 295 DGNIDYSKDFFGRQAFLTVSGQLQVETYACALSNVYTFGPTFRAENSHTSRHLAEFWMVE 354

Query: 325 PELAFADLNDDMACATAYLQFVIRYILDNCKEDMEFFNTWTDKGIIDRLSV 375
           PE+AFADL DDM CA AY++++  ++L+ C  DME      D G IDRL +
Sbjct: 355 PEIAFADLEDDMNCAEAYVKYMCNWLLEKCYADMELMAKNFDSGCIDRLKL 405


>AT3G07420.1 | Symbols: NS2, ATNS2, SYNC2_ARATH, SYNC2 |
           asparaginyl-tRNA synthetase 2 | chr3:2374179-2376644
           REVERSE LENGTH=638
          Length = 638

 Score =  179 bits (453), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/339 (32%), Positives = 164/339 (48%), Gaps = 65/339 (19%)

Query: 98  PQATVTFLEINDGSCLSNMQCVLDPEVEGYDQVGLITTGASVWVQGVVVE--SQGAXXXX 155
           P   V +  I+DGS +S++Q V+D  +       L+  G  +  +GV+    +  A    
Sbjct: 135 PPEYVFYFLISDGSSISSLQVVVDSALSTVPATQLMALGTCIVAEGVLRLPLAASAKHVI 194

Query: 156 XXXXXXXXXXXXSDP-SFPIQKKRVSNEFLRTKAHLRPRTNTFGAVARVRNALAYATHKF 214
                        DP  +P+ KK++    LR  +H RPRT T G+V RV +AL  A+H F
Sbjct: 195 ELEAEKLLHVGTVDPEKYPLSKKQLPLHMLRDFSHFRPRTTTVGSVTRVHSALTLASHTF 254

Query: 215 FQENGFVWVSSPIITASDCEGAGEQFCVTTLI---------------------------- 246
            Q +GF +V  P+IT +   G GE F VTTL+                            
Sbjct: 255 LQYHGFQYVQVPVITTT--TGFGEMFRVTTLLGKTDDKEEKKPPVQEKDGFSIDTVKAVI 312

Query: 247 -------------PSSHESADSPIDAIPKIND-------------------KLIDWSQDF 274
                         S+ E+  + +  + K ND                   + +D+S+DF
Sbjct: 313 KEKTRLIDHLKRSDSNRETVVAAVHDLKKTNDLASQIEMKQKSKTGTLVKPEKLDFSKDF 372

Query: 275 FGKPAFLTVSGQLNAETYATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLND 334
           FG+  +LT SG+ + E+YA+AL  VYTFGP F A+  + +RHLAE W +E E+AFA+L+D
Sbjct: 373 FGRDTYLTASGRFHLESYASALGKVYTFGPRFIADKIDNARHLAEKWNVETEMAFAELDD 432

Query: 335 DMACATAYLQFVIRYILDNCKEDMEFFNTWTDKGIIDRL 373
            M CA  Y +F+ +Y+L+N  EDM+F +   DK I  RL
Sbjct: 433 AMDCADEYFKFLCKYVLENRDEDMKFISKRVDKTITTRL 471


>AT1G68420.1 | Symbols:  | Class II aaRS and biotin synthetases
           superfamily protein | chr1:25653893-25654156 FORWARD
           LENGTH=87
          Length = 87

 Score = 90.1 bits (222), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/77 (51%), Positives = 55/77 (71%)

Query: 296 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFVIRYILDNCK 355
           + DVYTF PTFRAE S+TSRHLAEFWM+E ELAFA + + M C+ A ++ +   +L+ C+
Sbjct: 1   MGDVYTFAPTFRAEKSHTSRHLAEFWMVEVELAFAGVEEAMNCSEAVVKDMCTTLLEKCR 60

Query: 356 EDMEFFNTWTDKGIIDR 372
           +DME+     D+  IDR
Sbjct: 61  DDMEYMVEKVDEFCIDR 77