Miyakogusa Predicted Gene

Lj4g3v1248000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1248000.1 Non Chatacterized Hit- tr|I3SF84|I3SF84_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4
SV=1,96.59,1.99993e-41,LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN E,NULL; snRNP Sm proteins,Ribonucl,CUFF.48712.1
         (88 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein family...   168   5e-43
AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein family...   164   8e-42
AT2G18740.2 | Symbols:  | Small nuclear ribonucleoprotein family...   137   2e-33
AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein fa...    47   3e-06

>AT2G18740.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:8123334-8124710 FORWARD LENGTH=88
          Length = 88

 Score =  168 bits (426), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 81/88 (92%), Positives = 86/88 (97%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
          ++KKN+RK LGRILLKGDNITLMMNTGK
Sbjct: 61 SIKKNTRKPLGRILLKGDNITLMMNTGK 88


>AT4G30330.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr4:14836773-14837919 REVERSE LENGTH=88
          Length = 88

 Score =  164 bits (416), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 79/88 (89%), Positives = 84/88 (95%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKNSRKTLGRILLKGDNITLMMNTGK 88
          ++KK +RK LGRILLKGDNITLMMN GK
Sbjct: 61 SIKKKTRKPLGRILLKGDNITLMMNAGK 88


>AT2G18740.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:8123334-8124581 FORWARD LENGTH=78
          Length = 78

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/71 (90%), Positives = 69/71 (97%)

Query: 1  MASTKVQRVMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEV 60
          MASTKVQR+MTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV
Sbjct: 1  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV 60

Query: 61 NVKKNSRKTLG 71
          ++KKN+RK LG
Sbjct: 61 SIKKNTRKPLG 71


>AT5G48870.1 | Symbols: SAD1 | Small nuclear ribonucleoprotein
          family protein | chr5:19813407-19814362 FORWARD
          LENGTH=88
          Length = 88

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)

Query: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNSRKT--L 70
          P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +    R+   L
Sbjct: 10 PSELIDRCIGSK----IWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGRRVTKL 65

Query: 71 GRILLKGDNITLMMNTGK 88
           +ILL G+NI +++  G 
Sbjct: 66 DQILLNGNNIAILVPGGS 83