Miyakogusa Predicted Gene

Lj4g3v1218370.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1218370.1 CUFF.48659.1
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59980.1 | Symbols:  | Nucleic acid-binding, OB-fold-like pro...   113   2e-26

>AT3G59980.1 | Symbols:  | Nucleic acid-binding, OB-fold-like
           protein | chr3:22154528-22155570 REVERSE LENGTH=273
          Length = 273

 Score =  113 bits (283), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 71/103 (68%), Gaps = 1/103 (0%)

Query: 1   MRGVKSSGMLMAASDAKHENVELLFPPEEATPGERIWFGSEDEKDXXXXXXXXXXXXXXX 60
           MRGVKS GML+AASDA HENVELL PPE + PG+R+WFG+E++ +               
Sbjct: 172 MRGVKSCGMLLAASDAAHENVELLVPPEGSVPGDRVWFGNEEDLEQLPEPAPPNKVQKKK 231

Query: 61  XWELVQPHLKTDASCTALLGGVHVMRTSLGSVACQSLQNANIS 103
            WELVQP LKTDAS  ++L   H+MRTS G V  +SL+NANIS
Sbjct: 232 MWELVQPLLKTDASGVSMLKE-HLMRTSSGLVTSKSLRNANIS 273