Miyakogusa Predicted Gene

Lj4g3v1212380.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1212380.1 Non Chatacterized Hit- tr|I3SGH2|I3SGH2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.61,0,Chlorophyll a-b binding protein,Chlorophyll a/b binding
protein domain; seg,NULL,CUFF.48646.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family p...   262   2e-70
AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family p...   258   4e-69

>AT4G17600.1 | Symbols: LIL3:1 | Chlorophyll A-B binding family
           protein | chr4:9803759-9804714 FORWARD LENGTH=262
          Length = 262

 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 120/161 (74%), Positives = 139/161 (86%), Gaps = 2/161 (1%)

Query: 101 FEDPRWVAGTWDLMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPW 160
           F+D RW+ GTWDL QF K+G TDWD+VI AEA+RRKWL++NPE++SN+ PV+FDTSI+PW
Sbjct: 102 FQDARWINGTWDLKQFEKDGKTDWDSVIVAEAKRRKWLEENPETTSNDEPVLFDTSIIPW 161

Query: 161 WAWIKRFHLPEAERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLL 220
           WAWIKR+HLPEAE LNGRAAMIGFFMAY VDSLTGVGLVDQ  NF CKTLLF+AVAGVL 
Sbjct: 162 WAWIKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLF 221

Query: 221 IRKNEDLENLKKLFDETTFYDKQWQATWQ--DENSNTSKKE 259
           IRKNED++ LK LFDETT YDKQWQA W+  D+ S  SKK+
Sbjct: 222 IRKNEDVDKLKNLFDETTLYDKQWQAAWKNDDDESLGSKKK 262


>AT5G47110.1 | Symbols: LIL3:2 | Chlorophyll A-B binding family
           protein | chr5:19134218-19135238 REVERSE LENGTH=258
          Length = 258

 Score =  258 bits (658), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 115/155 (74%), Positives = 136/155 (87%)

Query: 101 FEDPRWVAGTWDLMQFRKNGSTDWDAVIDAEARRRKWLQDNPESSSNENPVVFDTSIVPW 160
           +++ +WV GTWDL QF K+G TDWD+VI +EA+RRKWL+DNPE++SN+  VVFDTSI+PW
Sbjct: 99  YQNAKWVNGTWDLKQFEKDGKTDWDSVIVSEAKRRKWLEDNPETTSNDELVVFDTSIIPW 158

Query: 161 WAWIKRFHLPEAERLNGRAAMIGFFMAYLVDSLTGVGLVDQTNNFVCKTLLFIAVAGVLL 220
           WAW+KR+HLPEAE LNGRAAMIGFFMAY VDSLTGVGLVDQ  NF CKTLLF+AVAGVL 
Sbjct: 159 WAWMKRYHLPEAELLNGRAAMIGFFMAYFVDSLTGVGLVDQMGNFFCKTLLFVAVAGVLF 218

Query: 221 IRKNEDLENLKKLFDETTFYDKQWQATWQDENSNT 255
           IRKNEDL+ LK LFDETT YDKQWQA W++ +S+T
Sbjct: 219 IRKNEDLDKLKDLFDETTLYDKQWQAAWKEPDSST 253