Miyakogusa Predicted Gene

Lj4g3v1212310.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1212310.2 Non Chatacterized Hit- tr|I1MV77|I1MV77_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.21664
PE,85.27,0,alpha/beta knot,NULL; SpoU_methylase,tRNA/rRNA
methyltransferase, SpoU; 23S RRNA METHYLTRANSFERASE,N,CUFF.48635.2
         (404 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   491   e-139

>AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
            protein | chr4:9805652-9814910 REVERSE LENGTH=1850
          Length = 1850

 Score =  491 bits (1265), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 252/395 (63%), Positives = 303/395 (76%)

Query: 8    VFIAANVILHSSKDVQPRHLDELFPPLVPLLTSHHHSLRGFTQLLVYQILHKLFPLLNDG 67
            + + ANVILH+ K  Q  HL EL PP++PLLTSHHHSLRGF QLLV+++L +LFP +   
Sbjct: 1455 MIVFANVILHAEKIAQQTHLRELLPPILPLLTSHHHSLRGFAQLLVHRVLFRLFPPVEST 1514

Query: 68   SSEILPLEKRCLVDLKLYLARNSDCARLRASMEGYLDAYNPNSSVTPAGIFVNRVEEDNF 127
            SS  + LEK    +LK YL +N DC+RLRASMEG+LDAY+P++S TPAG+FVNRVEE  F
Sbjct: 1515 SSHTISLEKLSFENLKSYLDKNPDCSRLRASMEGFLDAYDPSTSATPAGVFVNRVEESEF 1574

Query: 128  ECVPTSLMEQVLKFLNDVREDLRCSMAKDVVTLRNETLKSYGDTNCMKNVSGDTEGIVLK 187
            ECVPT LM+ VL FLNDVREDLR SMAKDVVT++NE  K   +      +S   E  + +
Sbjct: 1575 ECVPTCLMDNVLSFLNDVREDLRASMAKDVVTIKNEGFKIDEEPKRRLIMSTTDEERLSE 1634

Query: 188  DMSSDFQKKVTLAKHNKGDNEAGFLYSNDETYRKMAEIEXXXXXXXXXXXXXXXXXXXXX 247
              S DFQ+K+TL+KH K D  +  +  N ETY+++ E+E                     
Sbjct: 1635 PSSLDFQRKITLSKHEKQDASSTSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLK 1694

Query: 248  ASRQNCILVASLLDRIPNLAGLARSCEVFGASGLAIADKNIISDKQFQLISVTAEKWVPI 307
            + RQ+ ILVASL+DRIPNLAGLAR+CEVF AS LA+AD +II DKQFQLISVTAEKWVPI
Sbjct: 1695 SGRQSLILVASLVDRIPNLAGLARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPI 1754

Query: 308  IELPVDSIKAYLQKKKREGYSILGLEQTANSVALDQYVFPQKMVLVLGREKEGIPVDIIH 367
            +E+PV+S+K +L+KKKREG+SILGLEQTANSV+LD+Y FP+K VLVLGREKEGIPVDIIH
Sbjct: 1755 MEVPVNSLKLFLEKKKREGFSILGLEQTANSVSLDKYQFPKKTVLVLGREKEGIPVDIIH 1814

Query: 368  ILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 402
            ILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR
Sbjct: 1815 ILDACIEIPQLGVVRSLNVHVSGAIALWEYTRQQR 1849