Miyakogusa Predicted Gene

Lj4g3v1212300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1212300.1 Non Chatacterized Hit- tr|E1ZMU7|E1ZMU7_CHLVA
Putative uncharacterized protein OS=Chlorella
variabil,30.99,0.0000004,seg,NULL,gene.g54218.t1.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   237   5e-63

>AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
            protein | chr4:9805652-9814910 REVERSE LENGTH=1850
          Length = 1850

 Score =  237 bits (604), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 128/191 (67%), Positives = 149/191 (78%)

Query: 1    MWNLVHSSWILHVNCNKRRVASIAALLSSVLHPFLFNDERMHQTDNAPGPLKWFIENLLE 60
            MW LV S WILH++C KRRVA IAALLSSVLH  LF+++ MH T++  GPLKWF+E +LE
Sbjct: 1156 MWQLVKSCWILHISCKKRRVAPIAALLSSVLHSSLFSNKDMHITEDEHGPLKWFVEKVLE 1215

Query: 61   EGTKSPRTIRXXXXXXXXXXXXNPRIIRFYLKELKLLSLYGSVAFDEDFEAELGDNNDAR 120
            EG KSPRTIR             PR I++Y+KEL+LL+LYGSVAFDEDFEAEL DNNDAR
Sbjct: 1216 EGQKSPRTIRLAALHLSGLWLMYPRTIKYYIKELRLLTLYGSVAFDEDFEAELSDNNDAR 1275

Query: 121  LEVSLLARSPDPELTEAFINTELYARVSVAVMFCKLADLACMVGSPDENAHCKAALESGK 180
             EVSLLA+SPDPELTE FINTELYARVSVA +F KLA+LA MV    +N  C+ AL +GK
Sbjct: 1276 TEVSLLAKSPDPELTELFINTELYARVSVAGLFQKLANLAYMVEPASQNQDCQDALVAGK 1335

Query: 181  SFLLELLDSAV 191
             FLLELLD+AV
Sbjct: 1336 LFLLELLDAAV 1346