Miyakogusa Predicted Gene
- Lj4g3v1202200.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1202200.1 tr|A9SWH0|A9SWH0_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_231271,23.84,6e-17,PPR,Pentatricopeptide repeat;
seg,NULL; FAMILY NOT NAMED,NULL; PPR: pentatricopeptide repeat
domain,,CUFF.48622.1
(423 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G17616.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 376 e-104
AT1G03100.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 172 4e-43
AT1G69290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 106 2e-23
AT1G68980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 104 9e-23
AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat (... 68 2e-11
AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 60 4e-09
AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 59 5e-09
AT1G19290.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 58 1e-08
AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 58 2e-08
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720... 55 7e-08
AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 55 9e-08
AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 53 4e-07
AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 53 5e-07
AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 8e-07
AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like) su... 52 8e-07
AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 52 8e-07
AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 2e-06
AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repea... 50 2e-06
AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat (TPR)-... 50 2e-06
AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active ... 50 3e-06
AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 4e-06
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-... 49 5e-06
AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 5e-06
AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 49 5e-06
AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 9e-06
>AT4G17616.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr4:9819608-9821632 FORWARD
LENGTH=674
Length = 674
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/422 (45%), Positives = 270/422 (63%), Gaps = 9/422 (2%)
Query: 1 MNGLRDEMMELKGHIDGVSAAYARHYSQFYDSLLSLHFKFNDIDAAAKLVLDMNRLRDCH 60
MNG+RDE+ + K HI V HY F+D+LLSL FKF+DI +A +L LDM + +
Sbjct: 261 MNGMRDELRKFKEHIGQVPPQLLGHYQHFFDNLLSLEFKFDDIGSAGRLALDMCKSKVLV 320
Query: 61 ISKECTKRLQKPCFIGIGSSNLKNGLKIHIEPELLQKDSVLKVEGRQNLIFYKGGKLALS 120
+ +KP + +GS ++++GLKIHI P+LLQ+DS L V+ + Y KL ++
Sbjct: 321 SVENLGFDSEKPRVLPVGSHHIRSGLKIHISPKLLQRDSSLGVDTEATFVNYSNSKLGIT 380
Query: 121 NRAMVMFICGYKKDGQIXXXXXXXXXXQEGLYAVAGSSLCSDVIGACIQMGWLESAHDIL 180
N+ + + GYK+ + L+++ GS LC+DVI AC+ +GWLE+AHDIL
Sbjct: 381 NKTLAKLVYGYKRHDNLPELSKL-------LFSLGGSRLCADVIDACVAIGWLEAAHDIL 433
Query: 181 DDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKVSLHHKLSDDAFDKHIICEE 240
DD+ + G PM TY ++LS Y M R A+ LLKQM K L S++ E+
Sbjct: 434 DDMNSAGYPMELATYRMVLSGYYKSKMLRNAEVLLKQMTKAGLITDPSNEIVVSPETEEK 493
Query: 241 TAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKI 300
+ + DL V +I G+ ++Y NSS+++FCKA M DAL YR++ KMKI
Sbjct: 494 DSENTELRDLLVQ--EINAGKQMKAPSMLYELNSSLYYFCKAKMQGDALITYRKIPKMKI 551
Query: 301 QPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFE 360
PT+Q+F ++ YSSLGMYREITIVWGDIKR + +L +DL E L++NFLRGGYFE
Sbjct: 552 PPTVQSFWILIDMYSSLGMYREITIVWGDIKRNIASKNLKTTQDLLEKLVVNFLRGGYFE 611
Query: 361 RVMEVIDHMRNHNMYTDKWMYKSEFLRLHKNLYRRLKASDARTEAQSKRFEHVQEFKKWV 420
RVME+I +M+ ++MY D MYK+E+L+LHKNLYR LKASDA TEAQ++R EHV+ F+K V
Sbjct: 612 RVMELISYMKENDMYNDLTMYKNEYLKLHKNLYRTLKASDAVTEAQAQRLEHVKTFRKLV 671
Query: 421 GI 422
GI
Sbjct: 672 GI 673
>AT1G03100.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:744026-746407 REVERSE
LENGTH=793
Length = 793
Score = 172 bits (436), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 138/494 (27%), Positives = 231/494 (46%), Gaps = 78/494 (15%)
Query: 2 NGLRDEMMELKGHIDGVSAAYARHYSQFYDSLLSLHFKFNDIDAAAKLVLDMNRLRDCHI 61
NG R+E+ +L+ HID + QFY+ LL H KF D+++A+K+VL+M LR +
Sbjct: 306 NGRREELRKLQRHIDEACNLNESQFWQFYNCLLMCHLKFGDLESASKMVLEM--LRRGKV 363
Query: 62 SKEC-----------------TKRLQ------------KPCFIGIGS-------SNLKNG 85
++ TKR+ + + I S S +
Sbjct: 364 ARNSLGAAILEFDTADDGRLYTKRVSGKGSEVKEHDNPETRVVSIHSMIPYDEFSRDRKF 423
Query: 86 LKIHIEPELLQKDSVLKVEGRQNLIFYKGGKLALSNRAMVMFICGYKKDGQIXXXXXXXX 145
LK+ E + + + K+ + LI + G L + V + + G++
Sbjct: 424 LKLEAEAKDVLGALLAKLHVQVELITSERGVLQPTEEIYVKLAKAFLESGKMKELAKFLL 483
Query: 146 XXQEGLYAVAG-SSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQN 204
+ V+ +S+ +VI ACI +G L+ AHD+LD++ G G Y LL AY N
Sbjct: 484 KAEHEDSPVSSDNSMLINVINACISLGMLDQAHDLLDEMRMAGVRTGSSVYSSLLKAYCN 543
Query: 205 GGMQREAKALLKQMKK--VSLHHKLSDDAFDKHIICEET--AYSVGKSDLAVALAQILKG 260
RE +LL+ +K + L + +I +T A +V K + A+IL+G
Sbjct: 544 TNQTREVTSLLRDAQKAGIQLDSSCYEALIQSQVIQNDTHGALNVFKE---MKEAKILRG 600
Query: 261 EDQTVLPL-----------------------------VYNFNSSIFFFCKAGMIEDALKA 291
+Q L V+++N+ I FF K G+++DA KA
Sbjct: 601 GNQKFEKLLKGCEGNAEAGLMSKLLREIREVQSLDAGVHDWNNVIHFFSKKGLMQDAEKA 660
Query: 292 YRRMGKMKIQPTIQTFAYMLCGYSSLGM-YREITIVWGDIKRLMKG-ADLVGNRDLYELL 349
+RM + P QTF M+ GY+++G Y E+T +WG++K + + + +++L + +
Sbjct: 661 LKRMRSLGHSPNAQTFHSMVTGYAAIGSKYTEVTELWGEMKSIAAATSSMKFDQELLDAV 720
Query: 350 LLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYKSEFLRLHKNLYRRLKASDARTEAQSKR 409
L F+RGG+F R EV++ M NM+ DK+ Y+ FL+ HK Y+ KA ++E+Q K+
Sbjct: 721 LYTFVRGGFFSRANEVVEMMEKKNMFVDKYKYRMLFLKYHKTAYKG-KAPKVQSESQLKK 779
Query: 410 FEHVQEFKKWVGID 423
E FKKW+G+
Sbjct: 780 REAGLVFKKWLGLS 793
>AT1G69290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:26047372-26049348 REVERSE
LENGTH=658
Length = 658
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 146/309 (47%), Gaps = 39/309 (12%)
Query: 149 EGLYAVAGSSLCSDVIGACIQMGWLESAHDILDDVEATGS-PMGRETYMLLLSAYQNGGM 207
E Y SS+ +I AC+ +G+ + AH IL+++ A G +G Y+ +L AY
Sbjct: 354 ESSYVGVDSSVGFGIINACVNLGFSDKAHSILEEMIAQGGGSVGIGVYVPILKAYCKEYR 413
Query: 208 QREAKALLKQMKK--VSLHHKLSDDAFDKHIICEE--TAYSVGKS-------DLAVALAQ 256
EA L+ ++ + L ++S+ + + ++ +A+++ + DL +
Sbjct: 414 TAEATQLVTEISSSGLQLDVEISNALIEASMTNQDFISAFTLFRDMRENRVVDLKGSYLT 473
Query: 257 ILKG------------------EDQTVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKM 298
I+ G ED V +++NS I FCK+G +EDA + +RRM +
Sbjct: 474 IMTGLLENQRPELMAAFLDEVVEDPRVEVNSHDWNSIIHAFCKSGRLEDARRTFRRMVFL 533
Query: 299 KIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFL---- 354
+ +P QT+ ++ GY S Y + ++W +IK + + L L+ FL
Sbjct: 534 RYEPNNQTYLSLINGYVSGEKYFNVLLLWNEIKGKISSVEAEKRSRLDHALVDAFLYALV 593
Query: 355 RGGYFERVMEVIDHMRNHNMYTDKWMYKSEFLRLHKNLYRRLKASDARTEAQSKRFEHVQ 414
+GG+F+ M+V++ + ++ DKW YK F+ HK L RL R K+ E +
Sbjct: 594 KGGFFDAAMQVVEKSQEMKIFVDKWRYKQAFMETHKKL--RLPKLRKR---NYKKMESLV 648
Query: 415 EFKKWVGID 423
FK W G++
Sbjct: 649 AFKNWAGLN 657
>AT1G68980.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:25933023-25934882 FORWARD
LENGTH=619
Length = 619
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 137/303 (45%), Gaps = 40/303 (13%)
Query: 149 EGLYAVAGSSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQ 208
E + G S+ ++ AC+++G+ S ILD++ A G G Y+ +L AY G
Sbjct: 326 ESMSTDVGGSVGFGIVNACVKLGF--SGKSILDELNAQGGSGGIGVYVPILKAYCKEGRT 383
Query: 209 REAKALLKQMKK------VSLHHKLSDDAFDKH-IICEETAY----SVGKSDLAVALAQI 257
EA L+ ++ V ++ + + + KH + T + +DL I
Sbjct: 384 SEATQLVTEISSSGLQLDVETYNTMIEASMTKHDFLSALTLFRDMRETRVADLKRCYLTI 443
Query: 258 LKG------------------EDQTVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMK 299
+ G ED V +++NS I FCK+G + DA +RRM ++
Sbjct: 444 MTGLLENQRPELMAEFVEEVMEDPRVEVKSHDWNSIIHAFCKSGRLGDAKSTFRRMTFLQ 503
Query: 300 IQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYF 359
+P QT+ ++ GY S Y E+ ++W + K K A L L + L ++GG+F
Sbjct: 504 YEPNNQTYLSLINGYVSCEKYFEVVVIWKEFKD--KKAKL--EHALADAFLNALVKGGFF 559
Query: 360 ERVMEVIDHMRNHNMYTDKWMYKSEFLRLHKNLYRRLKASDARTEAQSKRFEHVQEFKKW 419
++VI+ + ++ DKW YK+ F+ KNL RL R + K+ E + FK W
Sbjct: 560 GTALQVIEKCQEMKIFVDKWRYKATFMETQKNL--RLPKLRKR---KMKKIEFLDAFKNW 614
Query: 420 VGI 422
I
Sbjct: 615 ARI 617
>AT3G09650.1 | Symbols: HCF152, CRM3 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr3:2958704-2961040
FORWARD LENGTH=778
Length = 778
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 78/391 (19%), Positives = 151/391 (38%), Gaps = 71/391 (18%)
Query: 82 LKNGLKIHIEPELLQKDSVLKVEGRQNLIFYKGGKLALSNRAMVMFICGYKKDGQIXXXX 141
L N + EP LL K +F A +R + GY K+G++
Sbjct: 393 LPNSVDPSGEPPLLPK------------VF------APDSRIYTTLMKGYMKNGRVADTA 434
Query: 142 X--XXXXXQEGLYAVAGSSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLL 199
Q+ + + V+ A + G ++ A +L ++ G P R TY +LL
Sbjct: 435 RMLEAMRRQDDRNSHPDEVTYTTVVSAFVNAGLMDRARQVLAEMARMGVPANRITYNVLL 494
Query: 200 SAYQNGGMQREAKALLKQMKKVSLHHKLSDDA------FDKHIICEETAYSV-------- 245
Y A+ LL++M + + D D I+ +++A ++
Sbjct: 495 KGYCKQLQIDRAEDLLREMTE---DAGIEPDVVSYNIIIDGCILIDDSAGALAFFNEMRT 551
Query: 246 -GKSDLAVALAQILKGEDQTVLPLVYN------------------FNSSIFFFCKAGMIE 286
G + ++ ++K + P + N +N + +C+ G+IE
Sbjct: 552 RGIAPTKISYTTLMKAFAMSGQPKLANRVFDEMMNDPRVKVDLIAWNMLVEGYCRLGLIE 611
Query: 287 DALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLM----------KG 336
DA + RM + P + T+ + G S + ++W +IK
Sbjct: 612 DAQRVVSRMKENGFYPNVATYGSLANGVSQARKPGDALLLWKEIKERCAVKKKEAPSDSS 671
Query: 337 AD-----LVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYKSEFLRLHKN 391
+D L + L + L +R +F++ +E+I M + + +K YK ++ +H
Sbjct: 672 SDPAPPMLKPDEGLLDTLADICVRAAFFKKALEIIACMEENGIPPNKTKYKKIYVEMHSR 731
Query: 392 LYRRLKASDARTEAQSKRFEHVQEFKKWVGI 422
++ AS AR + + +R + FK W+G+
Sbjct: 732 MFTSKHASQARIDRRVERKRAAEAFKFWLGL 762
>AT2G18940.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:8203873-8206341 REVERSE
LENGTH=822
Length = 822
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 73/138 (52%), Gaps = 5/138 (3%)
Query: 256 QILKGEDQTVL-PLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGY 314
+ILK +++ L P + ++N+ I FC+ G++++A++ M + I+P I T+ + GY
Sbjct: 687 EILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGY 746
Query: 315 SSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNM 374
+++GM+ EI D+ M D N +++++ + R G + M+ + ++ +
Sbjct: 747 TAMGMFAEIE----DVIECMAKNDCRPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDP 802
Query: 375 YTDKWMYKSEFLRLHKNL 392
D + LR+ +NL
Sbjct: 803 CFDDQSIQRLALRVRENL 820
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 160 CSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMK 219
CS V+ AC + G L A + ++++ G G TY LL + G+ EA ++LK+M+
Sbjct: 284 CSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEME 343
Query: 220 KVSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFF 279
+ S +D ++ K V KG V+P + + I +
Sbjct: 344 ENSCP---ADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKG----VMPNAITYTTVIDAY 396
Query: 280 CKAGMIEDALKAYRRMGKMKIQPTIQTFAYML 311
KAG ++ALK + M + P T+ +L
Sbjct: 397 GKAGKEDEALKLFYSMKEAGCVPNTCTYNAVL 428
>AT5G65560.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26201012-26203759 REVERSE
LENGTH=915
Length = 915
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 88/190 (46%), Gaps = 12/190 (6%)
Query: 194 TYMLLLSAYQNGGMQREAKALLKQMKKVSLHHKLSDDAFDKHIICEETAYSVGKSDLAVA 253
TY +L+ + + EA L+K+M++ + + +C + + +
Sbjct: 325 TYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARE----L 380
Query: 254 LAQILKGEDQTVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCG 313
L Q+L ++ ++P V +N+ I +CK GMIEDA+ M K+ P +T+ ++ G
Sbjct: 381 LGQML---EKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKG 437
Query: 314 YSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHN 373
Y +++ + ++ ++R + D+V Y L+ R G F+ ++ M +
Sbjct: 438 YCKSNVHKAMGVLNKMLERKVL-PDVVT----YNSLIDGQCRSGNFDSAYRLLSLMNDRG 492
Query: 374 MYTDKWMYKS 383
+ D+W Y S
Sbjct: 493 LVPDQWTYTS 502
>AT1G19290.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6666249-6668963 FORWARD
LENGTH=904
Length = 904
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 14/214 (6%)
Query: 165 GACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKVSLH 224
G C + G +E A + + ++ + Y +L+ Y G R+A + M ++ +
Sbjct: 305 GYC-KKGLMEEAEHVFELLKEKKLVADQHMYGVLMDGYCRTGQIRDAVRVHDNMIEIGVR 363
Query: 225 HKLSDDAFDKHIICEETAYSVGKSDLAVALAQIL-KGEDQTVLPLVYNFNSSIFFFCKAG 283
+ IC KS V QI + D ++ P + +N+ + +C+AG
Sbjct: 364 TNTT--------ICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAG 415
Query: 284 MIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNR 343
+++ALK +M + ++ PT+ T+ +L GYS +G + ++ +W + + AD +
Sbjct: 416 YVDEALKLCDQMCQKEVVPTVMTYNILLKGYSRIGAFHDVLSLWKMMLKRGVNADEISCS 475
Query: 344 DLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTD 377
L E L + G F M++ +++ + TD
Sbjct: 476 TLLEAL----FKLGDFNEAMKLWENVLARGLLTD 505
>AT1G09820.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:3190594-3192414 REVERSE
LENGTH=606
Length = 606
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 101/234 (43%), Gaps = 18/234 (7%)
Query: 163 VIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAY----QNGGMQREAKALLKQM 218
VI A + G + A D+++D++ G +Y L+ Y NG M + A A+LK+M
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYK-ADAVLKEM 287
Query: 219 KKVSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGE-DQTVLPLVYNFNSSIF 277
+ + +S + +I+ + K D ++ K DQ V P V ++NS I
Sbjct: 288 ----VENDVSPNLTTFNILID----GFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLIN 339
Query: 278 FFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGA 337
C G I +A+ +M +QP + T+ ++ G+ M +E ++G + KG
Sbjct: 340 GLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSV----KGQ 395
Query: 338 DLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYKSEFLRLHKN 391
V +Y +L+ + + G + + + M + D Y L +N
Sbjct: 396 GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449
>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
chr2:13387201-13390550 REVERSE LENGTH=918
Length = 918
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 59/266 (22%), Positives = 109/266 (40%), Gaps = 49/266 (18%)
Query: 163 VIGACIQMGW-LESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKV 221
VI AC + G + D+++ G R T+ LL+ GG+ A+ L +M
Sbjct: 309 VIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMT-- 366
Query: 222 SLHHKLSDDAFDKHIICEETAYSVGKSDLAVA-LAQILKGEDQTVLPLVYNFNSSIFFFC 280
+ ++ D F + + + G+ DLA LAQ+ + ++P V ++++ I F
Sbjct: 367 --NRRIEQDVFSYNTLLDAICKG-GQMDLAFEILAQM---PVKRIMPNVVSYSTVIDGFA 420
Query: 281 KAGMIEDALKAY-----------------------------------RRMGKMKIQPTIQ 305
KAG ++AL + R M + I+ +
Sbjct: 421 KAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVGRSEEALDILREMASVGIKKDVV 480
Query: 306 TFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFERVMEV 365
T+ +L GY G Y E+ V+ ++KR ++ N Y L+ + +GG ++ ME+
Sbjct: 481 TYNALLGGYGKQGKYDEVKKVFTEMKR----EHVLPNLLTYSTLIDGYSKGGLYKEAMEI 536
Query: 366 IDHMRNHNMYTDKWMYKSEFLRLHKN 391
++ + D +Y + L KN
Sbjct: 537 FREFKSAGLRADVVLYSALIDALCKN 562
>AT5G01110.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:42114-44303 REVERSE
LENGTH=729
Length = 729
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 100/223 (44%), Gaps = 13/223 (5%)
Query: 160 CSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMK 219
C+ +IG+ +++GW+E A + ++ +G + T ++++A G + L Q++
Sbjct: 203 CNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ 262
Query: 220 KVSLHHKLSDDAFDKHIICEETAYSV-GKSDLAVALAQILKGEDQTVLPLVYNFNSSIFF 278
+ ++ + ++ I +AYS G + A L + G+ + P VY +N+ I
Sbjct: 263 EKGVYPDIV--TYNTLI----SAYSSKGLMEEAFELMNAMPGKGFS--PGVYTYNTVING 314
Query: 279 FCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGAD 338
CK G E A + + M + + P T+ +L G E V+ D M+ D
Sbjct: 315 LCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD----MRSRD 370
Query: 339 LVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMY 381
+V + + ++ F R G ++ + + ++ + D +Y
Sbjct: 371 VVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIY 413
>AT5G02860.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:654102-656561 FORWARD
LENGTH=819
Length = 819
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/265 (20%), Positives = 101/265 (38%), Gaps = 43/265 (16%)
Query: 153 AVAGSSLCSDVIGACIQMGWL-ESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREA 211
+A + + + C + G L + A + ++++A G + TY LL Y +EA
Sbjct: 274 GIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEA 333
Query: 212 KALLKQMKKVSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGE--DQTVLPLV 269
+L +M + F I+ + S D + A LK + ++ P V
Sbjct: 334 MKVLNEMVL---------NGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDV 384
Query: 270 YNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGD 329
+ + + + F +AG +E A+ + M +P I TF + Y + G + E+ ++ +
Sbjct: 385 FTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMYGNRGKFTEMMKIFDE 444
Query: 330 IK-------------------------------RLMKGADLVGNRDLYELLLLNFLRGGY 358
I + MK A V R+ + L+ + R G
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGS 504
Query: 359 FERVMEVIDHMRNHNMYTDKWMYKS 383
FE+ M V M + + D Y +
Sbjct: 505 FEQAMTVYRRMLDAGVTPDLSTYNT 529
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 98/232 (42%), Gaps = 29/232 (12%)
Query: 161 SDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKK 220
+ +I A + G L+ A ++ + + G+ TY LLS ++ G A ++ ++M+
Sbjct: 353 NSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMR- 411
Query: 221 VSLHHKLSDDAFDKHIICEETAY-----SVGKSDLAVALAQILKGEDQTVL----PLVYN 271
+A K IC A+ + GK +++K D+ + P +
Sbjct: 412 ---------NAGCKPNICTFNAFIKMYGNRGK------FTEMMKIFDEINVCGLSPDIVT 456
Query: 272 FNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIK 331
+N+ + F + GM + ++ M + P +TF ++ YS G + + V+
Sbjct: 457 WNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVY---- 512
Query: 332 RLMKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYKS 383
R M A + + Y +L RGG +E+ +V+ M + ++ Y S
Sbjct: 513 RRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNELTYCS 564
>AT4G28010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr4:13930379-13932493 FORWARD
LENGTH=704
Length = 704
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 11/209 (5%)
Query: 173 LESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKVSLHHKLSDDAF 232
LE A ++ ++++ +G T+ +L+ A+ G EA LK+MK + L L
Sbjct: 193 LEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTS 252
Query: 233 DKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFCKAGMIEDALKAY 292
C+ GK+ ++L+ D P +N+ I FCK G +++A + +
Sbjct: 253 LIRGFCDCGELDRGKA----LFDEVLERGDS---PCAITYNTLIRGFCKLGQLKEASEIF 305
Query: 293 RRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLN 352
M + ++P + T+ ++ G +G +E + LM D N Y +++
Sbjct: 306 EFMIERGVRPNVYTYTGLIDGLCGVGKTKEAL----QLLNLMIEKDEEPNAVTYNIIINK 361
Query: 353 FLRGGYFERVMEVIDHMRNHNMYTDKWMY 381
+ G +E+++ M+ D Y
Sbjct: 362 LCKDGLVADAVEIVELMKKRRTRPDNITY 390
>AT1G05670.2 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 12/221 (5%)
Query: 161 SDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKK 220
S V G C + G +E A ++ + EA G TY L+ AY G +A+ +LK+M
Sbjct: 496 SIVNGLC-KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 554
Query: 221 VSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFC 280
L + + C G+ L LA KG + P FNS + +C
Sbjct: 555 KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA---KG----IAPNATTFNSLVKQYC 607
Query: 281 KAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLV 340
++ A Y+ M + P +T+ ++ G+ +E ++ + MKG
Sbjct: 608 IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE----MKGKGFS 663
Query: 341 GNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMY 381
+ Y +L+ FL+ F EV D MR + DK ++
Sbjct: 664 VSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
>AT1G05670.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr1:1698574-1700799 REVERSE
LENGTH=741
Length = 741
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 12/221 (5%)
Query: 161 SDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKK 220
S V G C + G +E A ++ + EA G TY L+ AY G +A+ +LK+M
Sbjct: 496 SIVNGLC-KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLG 554
Query: 221 VSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFC 280
L + + C G+ L LA KG + P FNS + +C
Sbjct: 555 KGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLA---KG----IAPNATTFNSLVKQYC 607
Query: 281 KAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLV 340
++ A Y+ M + P +T+ ++ G+ +E ++ + MKG
Sbjct: 608 IRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQE----MKGKGFS 663
Query: 341 GNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMY 381
+ Y +L+ FL+ F EV D MR + DK ++
Sbjct: 664 VSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704
>AT5G64320.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:25723247-25725439 REVERSE
LENGTH=730
Length = 730
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 17/164 (10%)
Query: 153 AVAGSSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAK 212
VA + + +I A ++ G ++ A +++++ GSP+ TY L+ G +A+
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKAR 584
Query: 213 ALLKQMKKVSLHHKLSDDAFDKHIICEETAYSVGKSDL---AVALAQ--ILKGEDQTVLP 267
+L ++M L D +I C + +S + AV + +L+G P
Sbjct: 585 SLFEKM--------LRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST----P 632
Query: 268 LVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYML 311
+ FNS I C+AG IED L +R++ I P TF ++
Sbjct: 633 DIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLM 676
>AT5G61990.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:24900186-24903110 REVERSE
LENGTH=974
Length = 974
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 100/246 (40%), Gaps = 35/246 (14%)
Query: 163 VIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKVS 222
++G + G +E A ++LD++ G TY ++ Y G EA L +MK
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727
Query: 223 L------HHKLSDD--------------AFDKHIICEETA---------YSVGKSDLAV- 252
L + L D +K TA + GK++L
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFGKTELKTE 787
Query: 253 ALAQILKGE-DQTVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYML 311
L +++ G D+ P +N I + CK G +E A + + +M + PT+ T+ +L
Sbjct: 788 VLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLL 847
Query: 312 CGYSSLGMYREITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRN 371
GY +G E+ V+ + A + + +Y +++ FL+ G + + ++D M
Sbjct: 848 NGYDKMGRRAEMFPVFDE----AIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFA 903
Query: 372 HNMYTD 377
N D
Sbjct: 904 KNAVDD 909
>AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:18395294-18397578
FORWARD LENGTH=563
Length = 563
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 163 VIGACIQMGWLESAHDILDDVEATGSPMGRETYML--LLSAYQNGGMQREAKALLKQMKK 220
++ A Q G ++ + + D++ SP+ + Y ++ AY GM +E +A+L +M+
Sbjct: 214 LLRAFAQSGKVDQVNALFKDLDM--SPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMR- 270
Query: 221 VSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFC 280
++ D +++ + + +++ +++ LP FNS I +
Sbjct: 271 ---SNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLP---TFNSMIINYG 324
Query: 281 KAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGY---SSLGMYREITIVWGDIKRLMKGA 337
KA MI+ A +++M M P+ T+ M+ Y S+ REI G+ R++K +
Sbjct: 325 KARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKAS 384
Query: 338 DLVGNRDLY 346
L ++Y
Sbjct: 385 TLNAMLEVY 393
>AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:18395294-18397393
FORWARD LENGTH=510
Length = 510
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 87/189 (46%), Gaps = 14/189 (7%)
Query: 163 VIGACIQMGWLESAHDILDDVEATGSPMGRETYML--LLSAYQNGGMQREAKALLKQMKK 220
++ A Q G ++ + + D++ SP+ + Y ++ AY GM +E +A+L +M+
Sbjct: 214 LLRAFAQSGKVDQVNALFKDLDM--SPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRMR- 270
Query: 221 VSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFC 280
++ D +++ + + +++ +++ LP FNS I +
Sbjct: 271 ---SNECKPDIITFNVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLP---TFNSMIINYG 324
Query: 281 KAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGY---SSLGMYREITIVWGDIKRLMKGA 337
KA MI+ A +++M M P+ T+ M+ Y S+ REI G+ R++K +
Sbjct: 325 KARMIDKAEWVFKKMNDMNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKAS 384
Query: 338 DLVGNRDLY 346
L ++Y
Sbjct: 385 TLNAMLEVY 393
>AT1G74850.1 | Symbols: PTAC2 | plastid transcriptionally active 2 |
chr1:28119237-28122314 REVERSE LENGTH=862
Length = 862
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 106/244 (43%), Gaps = 27/244 (11%)
Query: 169 QMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKVSLHHKLS 228
Q G + + +++++ + TY +L+ + GG +E V+L H +
Sbjct: 364 QSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEV---------VTLFHDMV 414
Query: 229 DDAFDKHI-ICEETAYSVGKSDL---AVALAQILKGEDQTVLPLVYNFNSSIFFFCKAGM 284
++ + + E ++ GK L A + Q + D ++P + I F +A +
Sbjct: 415 EENIEPDMETYEGIIFACGKGGLHEDARKILQYMTAND--IVPSSKAYTGVIEAFGQAAL 472
Query: 285 IEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLVGNRD 344
E+AL A+ M ++ P+I+TF +L ++ G+ +E + + RL+ + NRD
Sbjct: 473 YEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAI---LSRLVDSG-IPRNRD 528
Query: 345 LYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYKS-----EFLRL---HKNLYRRL 396
+ + + +GG FE ++ M D+ ++ F RL + + +
Sbjct: 529 TFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARLVDECREQFEEM 588
Query: 397 KASD 400
KASD
Sbjct: 589 KASD 592
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 34/232 (14%)
Query: 163 VIGACIQMG--WLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKK 220
VI AC + G W E + ++ G TY LLSA G+ EA+ + + M
Sbjct: 217 VINACARGGLDW-EGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMVFRTMN- 274
Query: 221 VSLHHKLSDDAFDKHIICEETAYS-----VGKSDLAVALAQILKGEDQT--VLPLVYNFN 273
D I+ + T YS GK + +L GE + LP + ++N
Sbjct: 275 ------------DGGIVPDLTTYSHLVETFGKLRRLEKVCDLL-GEMASGGSLPDITSYN 321
Query: 274 SSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRL 333
+ + K+G I++A+ + +M P T++ +L + G Y D+++L
Sbjct: 322 VLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRY-------DDVRQL 374
Query: 334 ---MKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYK 382
MK ++ + Y +L+ F GGYF+ V+ + M N+ D Y+
Sbjct: 375 FLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENIEPDMETYE 426
>AT1G12775.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:4353906-4355840 FORWARD
LENGTH=644
Length = 644
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 97/239 (40%), Gaps = 35/239 (14%)
Query: 152 YAVAGSSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREA 211
Y++ LC D G L++A ++ +++E G TY L+ + N G +
Sbjct: 266 YSIIIDGLCKD--------GSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDG 317
Query: 212 KALLKQMKKVSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQT-VLPLVY 270
LL+ M K K+S + ++ + S K Q+LK Q + P
Sbjct: 318 AKLLRDMIK----RKISPNVVTFSVLID----SFVKEGKLREADQLLKEMMQRGIAPNTI 369
Query: 271 NFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGY-------SSLGMYREI 323
+NS I FCK +E+A++ M P I TF ++ GY L ++RE+
Sbjct: 370 TYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREM 429
Query: 324 TIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYK 382
+ ++G ++ N Y L+ F + G E ++ M + + D YK
Sbjct: 430 S---------LRG--VIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYK 477
>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr5:15895729-15897972
FORWARD LENGTH=747
Length = 747
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 99/230 (43%), Gaps = 12/230 (5%)
Query: 155 AGSSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQRE-AKA 213
+ SS+ V+ + ++ ++ A I+ +A G G +Y +L A A+
Sbjct: 132 STSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAEN 191
Query: 214 LLKQMKKVSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFN 273
+ K+M L ++S + F +I+ ++ ++ VAL K E + LP V +N
Sbjct: 192 VFKEM----LESQVSPNVFTYNILIRGFCFA---GNIDVALTLFDKMETKGCLPNVVTYN 244
Query: 274 SSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRL 333
+ I +CK I+D K R M ++P + ++ ++ G G +E++ V ++ R
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304
Query: 334 MKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMYKS 383
D V Y L+ + + G F + + + M H + Y S
Sbjct: 305 GYSLDEVT----YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTS 350
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/225 (19%), Positives = 101/225 (44%), Gaps = 19/225 (8%)
Query: 161 SDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKK 220
+ +I + + G + A + LD + G TY L+ + G EA +L++M
Sbjct: 349 TSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREM-- 406
Query: 221 VSLHHKLSDDAFDKHIICEETAYS----VGKSDLAVALAQILKGEDQTVLPLVYNFNSSI 276
+D+ F ++ + GK + A+A+ + +K ++ + P V ++++ +
Sbjct: 407 -------NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMK--EKGLSPDVVSYSTVL 457
Query: 277 FFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKG 336
FC++ +++AL+ R M + I+P T++ ++ G+ +E ++ ++ R+
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRV--- 514
Query: 337 ADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMY 381
L + Y L+ + G E+ +++ + M + D Y
Sbjct: 515 -GLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558
>AT5G38730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:15510901-15512691 FORWARD
LENGTH=596
Length = 596
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 6/151 (3%)
Query: 261 EDQTVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMY 320
E++ V P ++ +N+ I +CK M +AL RM + + P I T+ + G+S G
Sbjct: 230 EEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFSREGRM 289
Query: 321 REITIVWGDIKRLMKGADLVGNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWM 380
RE T ++ +IK D+ N Y L+ + R + + + + M +
Sbjct: 290 REATRLFREIKD-----DVTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVT 344
Query: 381 YKSEFLRLHKNLYRRLKASDARTEAQSKRFE 411
Y S +L ++ R +A+ TE K+ E
Sbjct: 345 YNSILRKLCED-GRIREANRLLTEMSGKKIE 374
>AT1G12300.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:4184163-4186076 REVERSE
LENGTH=637
Length = 637
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 20/221 (9%)
Query: 165 GACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREAKALLKQMKKVSLH 224
G C W + A + D ++ +P T+ +L+ ++ G REA+ L K+M +H
Sbjct: 307 GFCNAGRWDDGAKLLRDMIKRKINP-NVVTFSVLIDSFVKEGKLREAEELHKEM----IH 361
Query: 225 HKLSDDAFDKHII----CEETAYSVGKSDLAVALAQILKGEDQTVLPLVYNFNSSIFFFC 280
++ D + C+E + K++ V L + KG D P + FN I +C
Sbjct: 362 RGIAPDTITYTSLIDGFCKEN--HLDKANQMVDL-MVSKGCD----PNIRTFNILINGYC 414
Query: 281 KAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYREITIVWGDIKRLMKGADLV 340
KA I+D L+ +R+M + T+ ++ G+ LG V ++ + M +
Sbjct: 415 KANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLN----VAKELFQEMVSRKVP 470
Query: 341 GNRDLYELLLLNFLRGGYFERVMEVIDHMRNHNMYTDKWMY 381
N Y++LL G E+ +E+ + + M D +Y
Sbjct: 471 PNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511
>AT5G06400.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:1955959-1959051 FORWARD
LENGTH=1030
Length = 1030
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 73/179 (40%), Gaps = 28/179 (15%)
Query: 154 VAGSSLCSDVIGACIQMGWLESAHDILDDVEATGSPMGRETYMLLLSAYQNGGMQREA-- 211
V L D +G ++G + A LD + G P+ Y + + A G EA
Sbjct: 782 VPDRELVQDYLGCLCEVGNTKDAKSCLDSLGKIGFPVTV-AYSIYIRALCRIGKLEEALS 840
Query: 212 --------KALLKQMKKVSLHHKLSDDAFDKHIICEETAYSVGKSDLAVALAQILKGEDQ 263
++LL Q S+ H L + + DL AL ++ ++
Sbjct: 841 ELASFEGERSLLDQYTYGSIVHGL-----------------LQRGDLQKALDKVNSMKEI 883
Query: 264 TVLPLVYNFNSSIFFFCKAGMIEDALKAYRRMGKMKIQPTIQTFAYMLCGYSSLGMYRE 322
P V+ + S I +F K +E L+ ++M +P++ T+ M+CGY SLG E
Sbjct: 884 GTKPGVHVYTSLIVYFFKEKQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEE 942