Miyakogusa Predicted Gene

Lj4g3v1199760.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1199760.2 tr|G7L600|G7L600_MEDTR LRR and BTB/POZ
domain-containing protein FBL11 OS=Medicago truncatula
GN=MTR,69.63,0,seg,NULL; Broad-Complex, Tramtrack and Bric a
brac,BTB/POZ-like; BTB And C-terminal Kelch,BTB/Kelch-,CUFF.48597.2
         (819 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G36370.1 | Symbols:  | ubiquitin-protein ligases | chr2:15247...   649   0.0  
AT5G23340.1 | Symbols:  | RNI-like superfamily protein | chr5:78...    63   7e-10
AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protei...    55   2e-07
AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein | ch...    54   3e-07
AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily pr...    54   3e-07

>AT2G36370.1 | Symbols:  | ubiquitin-protein ligases |
           chr2:15247894-15252800 FORWARD LENGTH=898
          Length = 898

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/780 (45%), Positives = 489/780 (62%), Gaps = 43/780 (5%)

Query: 47  ILSFQTIKVQAHRSRLIEQSLYFRGLLSGSFSESCLGSITISWNVRVFMQILKHMYGVSL 106
           ILS+ ++KV+AHR+RLI++S YF GLLSGSFSES L  I++ WN+  F+ +L  +YG  +
Sbjct: 4   ILSYGSVKVRAHRTRLIQESSYFHGLLSGSFSESGLDHISVEWNLESFLNLLMCLYGYDI 63

Query: 107 DIAMDNIIPLYEGALYFGVETLLLKCETWLSEVFSPKGFQSTQIQIEDLIETWKFGLEHG 166
           +I   + +PL+E ALYFGVE LL  C+ WLS + S       ++++ DLI+ W FGLEH 
Sbjct: 64  EITSSSFLPLFESALYFGVEKLLSICKNWLSVLASSNDNALPKVELSDLIQIWSFGLEHA 123

Query: 167 SEFILNLCVGYLARNFMWAMHSNSFRKIPYDLLLSSVKHSHLTVDSEMHLSDALLFWLES 226
            EF+ +LCV YLA+NFM       F  +PY+LL+  VKH HLTV SEM L D LL WL++
Sbjct: 124 GEFVPDLCVAYLAKNFMLVKSDKYFGNVPYELLMWCVKHPHLTVHSEMDLVDGLLIWLDA 183

Query: 227 NMESLDRPCENEGNCSGILKQIRVGLLPLWFAAGKRNSFYFRLLAEESLDSIFRILPMGS 286
                D P  ++ N   +++Q+R  LLPLWF AG+  S  F   A++S++ + +++ M S
Sbjct: 184 GGRLSDLPESSQDNTINLMEQVRFSLLPLWFIAGRSKSHGFSKFADQSIELVTKLMKMPS 243

Query: 287 ---LEIFGYSDLQHLRIRLTEYSKRVNLSNCPQXXXXXXXXXXXXXXXXTDPMGKKIIEQ 343
              ++         +R+RLTEYS+ ++LS CPQ                 +   +K +E 
Sbjct: 244 TCLVDSLTDGPPTDVRVRLTEYSEILDLSGCPQLNEASLLLSILPNSYFANLRWRKSLES 303

Query: 344 FIANSGHPIRDQYAFPQKLLNTFTFEVVQELDISKCRRLLIEQAVDYFSQSFPSLRILKA 403
           F+ N     R Q     + L   +FE V+E+DISKC+RL  +  +  FS+SFPSLR L+A
Sbjct: 304 FLKNPDDDERHQEQISHRTLPILSFESVKEIDISKCQRLDYKVVIKCFSKSFPSLRKLRA 363

Query: 404 TYLLSIRTTSFLKSLEKCPLICEIDLTVDTTPIIPASVTVLSSSHAVVPLVPEKTSSLKY 463
            YLL+I+ ++ L+ L     + E+DLTVD +PIIP   +V  S                 
Sbjct: 364 AYLLNIKVSTLLELLLNFRELTEVDLTVDVSPIIPVQASVFYSG---------------- 407

Query: 464 QALETMSIHESRPPLSNVTKLTLEGRTDVSDLTLQHISKFCVSLCHLNIKGCTSVTDIGI 523
                    +    LS++T+LTLEGR+D+ D+ L+ IS+ C SLC+LNIKGC  ++D  I
Sbjct: 408 ---------QGHCLLSSITRLTLEGRSDICDMELRSISRVCESLCYLNIKGCALLSDACI 458

Query: 524 SDLIRGCKKLNSIVVCDTSFGINSVQALCSTISDSGDFPSLHSRDEHL--NSVVSNLQTL 581
           + +I+ CKKL S++VC TSF  NS+ ALC+TIS +         +EH+  NSV SNLQTL
Sbjct: 459 ASVIQRCKKLCSLIVCYTSFSENSILALCATISMT---------NEHMDINSVASNLQTL 509

Query: 582 HMGGCRDISESSLQELMSQTQVLKSLCLRGTDLVDQALYNYRGSSLKMLDVSNTKISGAA 641
           HM  C  ISE+SL  L++ +Q +KSLCLR T + D  L  + GS+L+ LD+SNT IS  A
Sbjct: 510 HMSKCEGISETSLLNLITHSQKMKSLCLRDTKVSDSVLCEFPGSTLEALDISNTTISWMA 569

Query: 642 LTYVVHRNPSLKCLKARGCRNLFQGNSFNEKRGYIFSSL--HEELHAELGNMCRLDEIEF 699
           L  V+ RNP+LK LKARGC+NL Q     + R   FS L   +E+   L     L+E+E 
Sbjct: 570 LARVISRNPNLKTLKARGCKNLLQLEV--DGRTDNFSPLVSGQEVFKCLSKGSGLEELEI 627

Query: 700 GWGVSSFSLSALEPALMSLKTINIGLGGMLGEEALRQLPAICPLLETIILHFQVISDIIV 759
           GWG S FS  +L PA   L+ I++GLG  LGE+ L+ LP+ CPLLE+I+LHFQ ISD  +
Sbjct: 628 GWGFSYFSFESLRPAASFLRVISVGLGASLGEDVLKLLPSTCPLLESIVLHFQEISDSAL 687

Query: 760 TKLVNSLLNLQELALCYCFGEISMSSFEFLMQNLRKLRLERVTPWMTNGDLVILTQNCRN 819
           T ++ SL +LQELAL YCFGEIS+ SF+F M NLRKLRLERVT WMTN DL++LTQ+C N
Sbjct: 688 TSVLTSLKHLQELALSYCFGEISLQSFKFSMPNLRKLRLERVTRWMTNDDLLVLTQSCPN 747


>AT5G23340.1 | Symbols:  | RNI-like superfamily protein |
           chr5:7856314-7857983 FORWARD LENGTH=405
          Length = 405

 Score = 63.2 bits (152), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 75/131 (57%), Gaps = 8/131 (6%)

Query: 480 NVTKLTLEGRTDVSDLTLQHISKFCVSLCHLNIKGCTSVTDIGISDLIRGCKKLNSIVVC 539
           ++  L L G   ++D +L+ +S+ C  L  L ++GCT++TD G++DL++GC+K+ S+ + 
Sbjct: 151 DLRALHLAGCRFITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDIN 210

Query: 540 DTS----FGINSVQALC-STISDSGDFPSLHSRDEHLNSVV---SNLQTLHMGGCRDISE 591
             S     G++SV   C S++            +E ++S+     NL+TL +GGCRDIS+
Sbjct: 211 KCSNVGDAGVSSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISD 270

Query: 592 SSLQELMSQTQ 602
            S+  L    +
Sbjct: 271 ESIMLLADSCK 281


>AT1G21410.1 | Symbols: SKP2A | F-box/RNI-like superfamily protein |
           chr1:7497479-7499386 FORWARD LENGTH=360
          Length = 360

 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 93/208 (44%), Gaps = 43/208 (20%)

Query: 450 VVPLVPEKTSSLKYQALETMSIHESRPPLSN------------VTKLTLEGRTDVSDLTL 497
           V+ LVP      K+  L+T+++ + +P L +            + +L L     ++D +L
Sbjct: 82  VLSLVP------KFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSL 135

Query: 498 QHISKFCVSLCHLNIKGCTSVTDIGISDLIRGCKKLNSIVVCDTSFGI------------ 545
             ++  C  L  LN+ GCTS +D  I+ L R C+KL  + +C     +            
Sbjct: 136 YALAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNC 195

Query: 546 NSVQAL----CSTISDSGDFPSLHSRDEHLNSVVSNLQTLHMGGCRDISESSLQELMSQT 601
           N +Q+L    C  ISD G           L     +L+TL + GC  I++ S+  L    
Sbjct: 196 NQMQSLNLGWCENISDDGVMS--------LAYGCPDLRTLDLCGCVLITDESVVALADWC 247

Query: 602 QVLKSLCL-RGTDLVDQALYNYRGSSLK 628
             L+SL L    ++ D+A+Y+   S +K
Sbjct: 248 VHLRSLGLYYCRNITDRAMYSLAQSGVK 275


>AT1G77000.2 | Symbols: SKP2B | RNI-like superfamily protein |
           chr1:28940888-28942401 FORWARD LENGTH=360
          Length = 360

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 37/196 (18%)

Query: 462 KYQALETMSIHESRPPLSN------------VTKLTLEGRTDVSDLTLQHISKFCVSLCH 509
           K+  L+T+ + + +P L +            +  L L   + ++D +L  +++ C +L  
Sbjct: 88  KFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTK 147

Query: 510 LNIKGCTSVTDIGISDLIRGCKKLNSIVVCDTSFGI--NSVQAL--------------CS 553
           LN+ GCTS +D  ++ L R C+KL  + +C     +  N++QA+              C 
Sbjct: 148 LNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCE 207

Query: 554 TISDSGDFPSLHSRDEHLNSVVSNLQTLHMGGCRDISESSLQELMSQTQVLKSLCL-RGT 612
            ISD G           L     +L+TL +  C  I++ S+  L ++   L+SL L    
Sbjct: 208 NISDDGVMS--------LAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

Query: 613 DLVDQALYNYRGSSLK 628
           ++ D+A+Y+   S +K
Sbjct: 260 NITDRAMYSLAQSGVK 275


>AT1G77000.1 | Symbols: ATSKP2;2, SKP2B | RNI-like superfamily
           protein | chr1:28940888-28942401 FORWARD LENGTH=360
          Length = 360

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 37/196 (18%)

Query: 462 KYQALETMSIHESRPPLSN------------VTKLTLEGRTDVSDLTLQHISKFCVSLCH 509
           K+  L+T+ + + +P L +            +  L L   + ++D +L  +++ C +L  
Sbjct: 88  KFVKLQTLVLRQDKPQLEDNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTK 147

Query: 510 LNIKGCTSVTDIGISDLIRGCKKLNSIVVCDTSFGI--NSVQAL--------------CS 553
           LN+ GCTS +D  ++ L R C+KL  + +C     +  N++QA+              C 
Sbjct: 148 LNLSGCTSFSDTALAHLTRFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCE 207

Query: 554 TISDSGDFPSLHSRDEHLNSVVSNLQTLHMGGCRDISESSLQELMSQTQVLKSLCL-RGT 612
            ISD G           L     +L+TL +  C  I++ S+  L ++   L+SL L    
Sbjct: 208 NISDDGVMS--------LAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCR 259

Query: 613 DLVDQALYNYRGSSLK 628
           ++ D+A+Y+   S +K
Sbjct: 260 NITDRAMYSLAQSGVK 275