Miyakogusa Predicted Gene
- Lj4g3v1166630.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1166630.1 tr|Q650Y9|Q650Y9_ORYSJ Os09g0563700 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0042B15.5 PE=2
,36.55,3e-18,seg,NULL; no description,Development/cell death domain;
DCD,Development/cell death domain; Dev_Cell_,CUFF.48586.1
(627 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domai... 169 6e-42
AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domai... 119 6e-27
AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domai... 119 6e-27
AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domai... 119 6e-27
AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domai... 117 3e-26
AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domai... 80 5e-15
AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domai... 80 5e-15
AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domai... 80 5e-15
AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domai... 69 1e-11
AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domai... 67 4e-11
AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose ... 60 5e-09
AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domai... 59 1e-08
>AT2G32910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:13959685-13961989 FORWARD LENGTH=691
Length = 691
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 182/394 (46%), Gaps = 59/394 (14%)
Query: 273 RLGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASS 332
++GGLIFMCN KT+PDCFR+ VMGV +KD V G+K I++ASS
Sbjct: 318 KIGGLIFMCNTKTRPDCFRFSVMGVQEKRKDFVKGIKPGLKLFLYDYDLKLLYGIFEASS 377
Query: 333 SGGMKLEPRAFHGKFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
+GGMKLE AF G FPAQVRF + SDC PL ES FKKAI ENYN +NKFKTELT QV K
Sbjct: 378 AGGMKLERNAFGGSFPAQVRFKVFSDCIPLAESQFKKAIIENYNNKNKFKTELTHKQVFK 437
Query: 393 LTRLFRPVGAHSAAQTIHSP---------RKTIIREREAPDGDXXXXXXXXXXXXXXXXX 443
L +LFRP A AQ H+ RK R+R AP
Sbjct: 438 LKKLFRP--AAIPAQVTHTQQIPVPRDTDRKRSDRDRYAP---GSSRGHPTRKHERRRAS 492
Query: 444 XXXXXEEINRDLYRTE-NYQAYGLQGDRRNVAPTSHVYPILEPYGGDYGHHTRGPIYRSN 502
EE RDLY +E Y+ YGL+G T+ Y I P H
Sbjct: 493 PPPRREEQPRDLYLSEREYRTYGLRG-----GETTQHYQIPPPESSSSYH---------- 537
Query: 503 VLAHAPVHVQS-RHMDPHENYYRGA-VSDH----VRDPHYE------YRYGASPRDVYVS 550
++ VH+ S R H+ R A + H VR PH Y + S R++ V
Sbjct: 538 IVNRDRVHLDSYRSSMDHDRLLRQAEIERHDRREVRHPHLSERDYQTYDHLTSRREILVR 597
Query: 551 R------EDITSSSYLVGGRPVVGTDNLQR----REIVPDR----LYSVYSAADALPDYH 596
+T SY + L+R + P R LYS Y D+L +Y+
Sbjct: 598 NSPDPPDSAVTLDSYRRDPYYICERHALERPPRTYMVSPGRQDDDLYSRYVTPDSLAEYY 657
Query: 597 RMQPYHGDRLEGS--PARVSARYSFA-GPSYYHR 627
R + E P+ V++RY+++ Y HR
Sbjct: 658 RSSQRYPSVTEPELPPSLVTSRYAYSRSLPYSHR 691
>AT5G61910.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 273 RLGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASS 332
+L G IFMCN +TK DC+RYRV G+ G KD V +K +Y+A+
Sbjct: 60 QLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATV 119
Query: 333 SGGMKLEPRAFHGKFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
G + +EP AF GK+PAQV F I +C PL E+ FK AI ENY + +KFK EL+ QV
Sbjct: 120 GGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENY-KGSKFKQELSPHQVMS 178
Query: 393 LTRLFRPVGA-------HSAAQTIHSPRKTIIRER 420
L LFR + H A +PR ER
Sbjct: 179 LLSLFRSFTSPELDLLPHRLASRASAPRTLSFEER 213
>AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863729 REVERSE LENGTH=738
Length = 738
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 273 RLGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASS 332
+L G IFMCN +TK DC+RYRV G+ G KD V +K +Y+A+
Sbjct: 60 QLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATV 119
Query: 333 SGGMKLEPRAFHGKFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
G + +EP AF GK+PAQV F I +C PL E+ FK AI ENY + +KFK EL+ QV
Sbjct: 120 GGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENY-KGSKFKQELSPHQVMS 178
Query: 393 LTRLFRPVGA-------HSAAQTIHSPRKTIIRER 420
L LFR + H A +PR ER
Sbjct: 179 LLSLFRSFTSPELDLLPHRLASRASAPRTLSFEER 213
>AT5G61910.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24861091-24863741 REVERSE LENGTH=742
Length = 742
Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 273 RLGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASS 332
+L G IFMCN +TK DC+RYRV G+ G KD V +K +Y+A+
Sbjct: 64 QLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATV 123
Query: 333 SGGMKLEPRAFHGKFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
G + +EP AF GK+PAQV F I +C PL E+ FK AI ENY + +KFK EL+ QV
Sbjct: 124 GGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENY-KGSKFKQELSPHQVMS 182
Query: 393 LTRLFRPVGA-------HSAAQTIHSPRKTIIRER 420
L LFR + H A +PR ER
Sbjct: 183 LLSLFRSFTSPELDLLPHRLASRASAPRTLSFEER 217
>AT5G61910.4 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:24855908-24863729 REVERSE LENGTH=1346
Length = 1346
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 82/155 (52%), Gaps = 8/155 (5%)
Query: 273 RLGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASS 332
+L G IFMCN +TK DC+RYRV G+ G KD V +K +Y+A+
Sbjct: 60 QLPGYIFMCNGRTKTDCYRYRVFGIPRGGKDVVESIKPGMKLFLYDFEKRLLYGVYEATV 119
Query: 333 SGGMKLEPRAFHGKFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
G + +EP AF GK+PAQV F I +C PL E+ FK AI ENY + +KFK EL+ QV
Sbjct: 120 GGRLDIEPEAFEGKYPAQVGFRIVMNCLPLTENTFKSAIYENY-KGSKFKQELSPHQVMS 178
Query: 393 LTRLFRPVGA-------HSAAQTIHSPRKTIIRER 420
L LFR + H A +PR ER
Sbjct: 179 LLSLFRSFTSPELDLLPHRLASRASAPRTLSFEER 213
>AT2G35140.3 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 276 GLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASSSGG 335
G IFM N T+ +C ++ G+ G V VK +++A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 336 MKLEPRAFHG---KFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
+ +EP AF +FPAQV+F+ C PL ES F AI ENY KF L+ +QV++
Sbjct: 83 INIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPTKFNFGLSKAQVQR 142
Query: 393 LTRLF 397
L +LF
Sbjct: 143 LLKLF 147
>AT2G35140.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 276 GLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASSSGG 335
G IFM N T+ +C ++ G+ G V VK +++A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 336 MKLEPRAFHG---KFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
+ +EP AF +FPAQV+F+ C PL ES F AI ENY KF L+ +QV++
Sbjct: 83 INIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPTKFNFGLSKAQVQR 142
Query: 393 LTRLF 397
L +LF
Sbjct: 143 LLKLF 147
>AT2G35140.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr2:14813990-14816808 FORWARD LENGTH=879
Length = 879
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Query: 276 GLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASSSGG 335
G IFM N T+ +C ++ G+ G V VK +++A S G
Sbjct: 23 GAIFMSNNSTRKECLSRKLFGLPIGLGGFVKHVKAGMMLFLFEFEKRELHGVFQACSDGA 82
Query: 336 MKLEPRAFHG---KFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTLSQVRK 392
+ +EP AF +FPAQV+F+ C PL ES F AI ENY KF L+ +QV++
Sbjct: 83 INIEPNAFRSSGKQFPAQVKFTEKWRCRPLCESEFGNAIHENYFTPTKFNFGLSKAQVQR 142
Query: 393 LTRLF 397
L +LF
Sbjct: 143 LLKLF 147
>AT3G11000.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3448442-3450283 FORWARD LENGTH=488
Length = 488
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 274 LGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASSS 333
L G+IF C T +C+ + G+ A + + I++A+S
Sbjct: 11 LCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASE 70
Query: 334 GGMKLEPRAFH------GKFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTL 387
G + ++ +A+ +PAQV+ + C PLPE F I ENYN+ F EL
Sbjct: 71 GKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELDR 130
Query: 388 SQVRKLTRLFRP 399
Q KL RLF+P
Sbjct: 131 GQTNKLLRLFKP 142
>AT3G11000.2 | Symbols: | DCD (Development and Cell Death) domain
protein | chr3:3447847-3450283 FORWARD LENGTH=607
Length = 607
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 274 LGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASSS 333
L G+IF C T +C+ + G+ A + + I++A+S
Sbjct: 130 LCGVIFGCKFSTIKECYAKNLFGLPAPHMAYIKNIDPGLTLFLFNYSDRTLHGIFEAASE 189
Query: 334 GGMKLEPRAFH------GKFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELTL 387
G + ++ +A+ +PAQV+ + C PLPE F I ENYN+ F EL
Sbjct: 190 GKLNIDSKAWSPNGTDPSPYPAQVKVRVRVRCEPLPEEKFSPVIVENYNDDKMFWFELDR 249
Query: 388 SQVRKLTRLFRP 399
Q KL RLF+P
Sbjct: 250 GQTNKLLRLFKP 261
>AT5G01660.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Galactose
oxidase/kelch, beta-propeller (InterPro:IPR011043),
Kelch repeat type 1 (InterPro:IPR006652),
Development/cell death domain (InterPro:IPR013989),
Kelch related (InterPro:IPR013089), Kelch-type beta
propeller (InterPro:IPR015915); BEST Arabidopsis
thaliana protein match is: DCD (Development and Cell
Death) domain protein (TAIR:AT3G11000.1); Has 16133
Blast hits to 7053 proteins in 482 species: Archae - 40;
Bacteria - 1227; Metazoa - 10756; Fungi - 311; Plants -
1896; Viruses - 673; Other Eukaryotes - 1230 (source:
NCBI BLink). | chr5:244504-248442 REVERSE LENGTH=656
Length = 656
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 273 RLGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASS 332
+LGG++F C T +C ++ G+ + V + I++A+
Sbjct: 17 QLGGVVFGCTKNTIKECMSKQLFGLPSNHYPYVQKIDIGLPLFLFNYSDRTLHGIFEAAG 76
Query: 333 SGGMKLEPRAFHG------KFPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELT 386
G + +P + +PAQV S+ C PL E FK AI +NY + F EL
Sbjct: 77 CGQLNFDPYGWTSDGSERTSYPAQVPISVRLQCEPLSEEKFKPAIADNYYSSHHFWFELD 136
Query: 387 LSQVRKLTRLF 397
Q RKLT L
Sbjct: 137 HFQTRKLTCLL 147
>AT5G42050.1 | Symbols: | DCD (Development and Cell Death) domain
protein | chr5:16815630-16816932 FORWARD LENGTH=349
Length = 349
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Query: 274 LGGLIFMCNAKTKPDCFRYRVMGVSAGKKDDVLGVKRXXXXXXXXXXXXXXXXIYKASSS 333
+GG IF+CN T + + ++ G+ +D V + IY+A+S
Sbjct: 216 IGGYIFVCNNDTMEENLKRQLFGLPPRYRDSVRAITPGLPLFLYNYSTHQLHGIYEAASF 275
Query: 334 GGMKLEPRAFHGK-------FPAQVRFSIASDCYPLPESVFKKAIKENYNERNKFKTELT 386
GG +E AF K FPAQVR C PL E F+ + ++ + KF+ EL+
Sbjct: 276 GGTNIELNAFEDKKCPGESRFPAQVRAITRKVCLPLEEDSFRPIL--HHYDGPKFRLELS 333
Query: 387 LSQVRKLTRLF 397
+ +V L +F
Sbjct: 334 VPEVLSLLDIF 344