Miyakogusa Predicted Gene

Lj4g3v1140680.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1140680.2 tr|A4RTC1|A4RTC1_OSTLU Predicted protein
(Fragment) OS=Ostreococcus lucimarinus (strain CCE9901)
GN=,35.2,6e-17,TLD,TLDc,CUFF.48520.2
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32520.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   314   3e-86

>AT1G32520.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
           growth stages; Has 143 Blast hits to 142 proteins in 34
           species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi -
           0; Plants - 56; Viruses - 0; Other Eukaryotes - 48
           (source: NCBI BLink). | chr1:11758422-11759272 REVERSE
           LENGTH=239
          Length = 239

 Score =  314 bits (805), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 193/232 (83%), Gaps = 11/232 (4%)

Query: 1   MASC-IPNS---LSFQG-RKTSP-NCLFGWNIGRKGVADNKP--QINYHD-IDLTFSTSL 51
           MASC I NS   ++F+  ++ SP N LFGWN G+K + + +P  Q  YHD +++ FS S+
Sbjct: 1   MASCAISNSFHTVTFKTLKRISPYNSLFGWNSGKK-IDNIRPPQQPAYHDDVEIPFSLSM 59

Query: 52  VDKTFLKGKELKCCYRATIDGFSAADFHNCCDFKGPCVIIGYT-NKNFKFGAFNPEGYRS 110
           V+KTFLKG+ELKCCY+A+IDGF A  FH  CDFKGPCVII YT +K+FKFG F+PEGYRS
Sbjct: 60  VNKTFLKGRELKCCYKASIDGFGATKFHERCDFKGPCVIIAYTKDKSFKFGGFSPEGYRS 119

Query: 111 TDDYYDTFDPFLFYWADIEAEPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVM 170
           TDDYYDTFD FLFYW +   +PIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVM
Sbjct: 120 TDDYYDTFDAFLFYWLEDCDDPIVLPKVGGSGAALFDYARGGPQFGADGLLIGPPLAPVM 179

Query: 171 GGFAGPDTNSGIGDLRQAKSRLGLSYAKREDGKESIFGDESRAVLQEVEVFC 222
           GGFAGPDTNSGIGDLR AKSRLGLSYAKR+DGKESIFGDE++  L +V VFC
Sbjct: 180 GGFAGPDTNSGIGDLRVAKSRLGLSYAKRKDGKESIFGDENKVSLDDVLVFC 231