Miyakogusa Predicted Gene

Lj4g3v1140610.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1140610.3 tr|A9RPY1|A9RPY1_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_68989
,35.29,1e-18,no description,NULL; UBIQUITIN_2,Ubiquitin supergroup;
Ubiquitin-like,NULL; seg,NULL,CUFF.48543.3
         (170 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G35360.1 | Symbols:  | ubiquitin family protein | chr2:148893...   186   5e-48

>AT2G35360.1 | Symbols:  | ubiquitin family protein |
           chr2:14889311-14890799 REVERSE LENGTH=225
          Length = 225

 Score =  186 bits (473), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 87/169 (51%), Positives = 117/169 (69%)

Query: 2   EDIVQEHESEKKVEIILKTIGPARPSRLLVPSSIKVRDLRRLIASNDHLPIDNLSLILRG 61
           E++  +  +   VEI  KTIGPARPS++ V S IK+RDLR  IA     P+  L +ILRG
Sbjct: 6   EELSSDSTNNGTVEITYKTIGPARPSQIRVASHIKIRDLRNAIAEKGKFPVSTLRMILRG 65

Query: 62  TALCDEKNGEDIRVELNDGDCLIIAVKPKPPVKAGFXXXXXXXXLKFQLPRTSSRWKKRL 121
            AL DE++G+D+ V L D D  I+AV P PP             LKF+LP ++SRWK++L
Sbjct: 66  KALQDEEDGDDLYVTLKDQDSFIVAVIPNPPAGVESFDDDDDDDLKFKLPPSASRWKRKL 125

Query: 122 YSFLRDNLKLPDILLMAIFTLSLRAWIFIIMWFILAPVAHRWDLGPLYV 170
           Y FLR+ LKLPDI+LM +F+LSL+ W+ I +WFILAP+AHRWDLGP+++
Sbjct: 126 YYFLRNKLKLPDIILMGLFSLSLKMWVIITLWFILAPIAHRWDLGPIFI 174