Miyakogusa Predicted Gene
- Lj4g3v1108100.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1108100.1 Non Chatacterized Hit- tr|I3S202|I3S202_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.05,0,no
description,DNA glycosylase; seg,NULL; DNA-glycosylase,DNA
glycosylase;
Adenine_glyco,Methyladeni,NODE_93385_length_1592_cov_14.918342.path2.1
(308 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13635.2 | Symbols: | DNA glycosylase superfamily protein | ... 372 e-103
AT1G13635.1 | Symbols: | DNA glycosylase superfamily protein | ... 372 e-103
AT1G75090.1 | Symbols: | DNA glycosylase superfamily protein | ... 235 3e-62
AT5G57970.2 | Symbols: | DNA glycosylase superfamily protein | ... 230 1e-60
AT5G57970.1 | Symbols: | DNA glycosylase superfamily protein | ... 230 1e-60
AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein | ... 225 2e-59
AT1G15970.1 | Symbols: | DNA glycosylase superfamily protein | ... 221 6e-58
AT1G80850.1 | Symbols: | DNA glycosylase superfamily protein | ... 214 5e-56
AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein | ... 210 8e-55
>AT1G13635.2 | Symbols: | DNA glycosylase superfamily protein |
chr1:4674248-4675784 FORWARD LENGTH=311
Length = 311
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/305 (59%), Positives = 218/305 (71%), Gaps = 4/305 (1%)
Query: 7 RRHALEKSMTLKDTQKILNQSFFPKSLKKVYPVGLQKXXXXXXXXXXXXXXXXXXXXXXX 66
R+ +EKS ++++ + N +FF K LK++YP+ LQ+
Sbjct: 8 RKEIVEKSKSVREKEIKQNSNFFAKHLKRIYPITLQRSTSSSFSLSSISLSLSQNSTDSV 67
Query: 67 XXXXXXPLDENISLALRLISVSPRQRREPTAAKTAQQLNTE---PGELKRCNWVTKNSDK 123
L++ ISLAL LIS SP +R QQL + E KRCNW+TK SD+
Sbjct: 68 STDSNSTLEQKISLALGLIS-SPHRREIFVPKSIPQQLCQDFNSSDEPKRCNWITKKSDE 126
Query: 124 AYIEFHDECWGVPAYDDNKLFELLALSGLLMDYNWTEILRRKETLREVFAEFDPYTVAKM 183
Y+ FHD+ WGVP YDDN LFE LA+SG+LMDYNWTEIL+RKE RE F EFDP VAKM
Sbjct: 127 VYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKEHFREAFCEFDPNRVAKM 186
Query: 184 EEKEIMEIASNKALSLAESRVMCIADNAKCIMKIIRECGSFSSYIWGFVNHKPIINRYKY 243
EKEI EIASNKA+ L ESRV CI DNAKCI K++ E GSFSS++WGF+++KPIIN++KY
Sbjct: 187 GEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSSFVWGFMDYKPIINKFKY 246
Query: 244 PRNVPLRSPKAEALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDHLVDCYRHDECVSLAER 303
RNVPLRSPKAE +SKDM+KRGFRFVGPVIVHSFMQAAGLTIDHLVDC+RH +CVSLAER
Sbjct: 247 SRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVDCFRHGDCVSLAER 306
Query: 304 PWRHI 308
PWRHI
Sbjct: 307 PWRHI 311
>AT1G13635.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:4674248-4675784 FORWARD LENGTH=311
Length = 311
Score = 372 bits (955), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/305 (59%), Positives = 218/305 (71%), Gaps = 4/305 (1%)
Query: 7 RRHALEKSMTLKDTQKILNQSFFPKSLKKVYPVGLQKXXXXXXXXXXXXXXXXXXXXXXX 66
R+ +EKS ++++ + N +FF K LK++YP+ LQ+
Sbjct: 8 RKEIVEKSKSVREKEIKQNSNFFAKHLKRIYPITLQRSTSSSFSLSSISLSLSQNSTDSV 67
Query: 67 XXXXXXPLDENISLALRLISVSPRQRREPTAAKTAQQLNTE---PGELKRCNWVTKNSDK 123
L++ ISLAL LIS SP +R QQL + E KRCNW+TK SD+
Sbjct: 68 STDSNSTLEQKISLALGLIS-SPHRREIFVPKSIPQQLCQDFNSSDEPKRCNWITKKSDE 126
Query: 124 AYIEFHDECWGVPAYDDNKLFELLALSGLLMDYNWTEILRRKETLREVFAEFDPYTVAKM 183
Y+ FHD+ WGVP YDDN LFE LA+SG+LMDYNWTEIL+RKE RE F EFDP VAKM
Sbjct: 127 VYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKEHFREAFCEFDPNRVAKM 186
Query: 184 EEKEIMEIASNKALSLAESRVMCIADNAKCIMKIIRECGSFSSYIWGFVNHKPIINRYKY 243
EKEI EIASNKA+ L ESRV CI DNAKCI K++ E GSFSS++WGF+++KPIIN++KY
Sbjct: 187 GEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSSFVWGFMDYKPIINKFKY 246
Query: 244 PRNVPLRSPKAEALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDHLVDCYRHDECVSLAER 303
RNVPLRSPKAE +SKDM+KRGFRFVGPVIVHSFMQAAGLTIDHLVDC+RH +CVSLAER
Sbjct: 247 SRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVDCFRHGDCVSLAER 306
Query: 304 PWRHI 308
PWRHI
Sbjct: 307 PWRHI 311
>AT1G75090.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:28187647-28189612 REVERSE LENGTH=329
Length = 329
Score = 235 bits (599), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 102/196 (52%), Positives = 141/196 (71%)
Query: 108 PGELKRCNWVTKNSDKAYIEFHDECWGVPAYDDNKLFELLALSGLLMDYNWTEILRRKET 167
PG +KRC+W+T NSD Y+ FHDE WGVP DD KLFELL S L +++W ILRR++
Sbjct: 115 PGPVKRCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDD 174
Query: 168 LREVFAEFDPYTVAKMEEKEIMEIASNKALSLAESRVMCIADNAKCIMKIIRECGSFSSY 227
R++F EFDP +A+ EK +M + N L L+E ++ I +NAK ++K+ +E GSFS+Y
Sbjct: 175 FRKLFEEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKVKQEFGSFSNY 234
Query: 228 IWGFVNHKPIINRYKYPRNVPLRSPKAEALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDH 287
W FVNHKP+ N Y+Y R VP++SPKAE +SKDM++RGFR VGP +++SF+QA+G+ DH
Sbjct: 235 CWRFVNHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDH 294
Query: 288 LVDCYRHDECVSLAER 303
L C+R+ EC ER
Sbjct: 295 LTACFRYQECNVETER 310
>AT5G57970.2 | Symbols: | DNA glycosylase superfamily protein |
chr5:23467316-23468910 FORWARD LENGTH=347
Length = 347
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 151/228 (66%), Gaps = 6/228 (2%)
Query: 82 LRLISVSPRQRREPTAAKTA---QQLNTEPG---ELKRCNWVTKNSDKAYIEFHDECWGV 135
+R SV R + P+ ++ L++ P KRC WVT NSD YI FHDE WGV
Sbjct: 118 IRSYSVGSRSKSYPSKPRSVVSEGALDSPPNGSETKKRCTWVTPNSDPCYIVFHDEEWGV 177
Query: 136 PAYDDNKLFELLALSGLLMDYNWTEILRRKETLREVFAEFDPYTVAKMEEKEIMEIASNK 195
P +DD +LFELL LSG L ++ W IL +++ REVFA+FDP + K+ EK+I+ S
Sbjct: 178 PVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREVFADFDPNAIVKINEKKIIGPGSPA 237
Query: 196 ALSLAESRVMCIADNAKCIMKIIRECGSFSSYIWGFVNHKPIINRYKYPRNVPLRSPKAE 255
+ L++ ++ + +NA+ I+K+I E GSF YIW FV +K I+++++Y R VP ++PKAE
Sbjct: 238 STLLSDLKLRAVIENARQILKVIEEYGSFDKYIWSFVKNKAIVSKFRYQRQVPAKTPKAE 297
Query: 256 ALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDHLVDCYRHDECVSLAER 303
+SKD+V+RGFR VGP +V+SFMQAAG+T DHL C+R C+ ER
Sbjct: 298 VISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLTSCFRFHHCIFEHER 345
>AT5G57970.1 | Symbols: | DNA glycosylase superfamily protein |
chr5:23467316-23468910 FORWARD LENGTH=347
Length = 347
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 151/228 (66%), Gaps = 6/228 (2%)
Query: 82 LRLISVSPRQRREPTAAKTA---QQLNTEPG---ELKRCNWVTKNSDKAYIEFHDECWGV 135
+R SV R + P+ ++ L++ P KRC WVT NSD YI FHDE WGV
Sbjct: 118 IRSYSVGSRSKSYPSKPRSVVSEGALDSPPNGSETKKRCTWVTPNSDPCYIVFHDEEWGV 177
Query: 136 PAYDDNKLFELLALSGLLMDYNWTEILRRKETLREVFAEFDPYTVAKMEEKEIMEIASNK 195
P +DD +LFELL LSG L ++ W IL +++ REVFA+FDP + K+ EK+I+ S
Sbjct: 178 PVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREVFADFDPNAIVKINEKKIIGPGSPA 237
Query: 196 ALSLAESRVMCIADNAKCIMKIIRECGSFSSYIWGFVNHKPIINRYKYPRNVPLRSPKAE 255
+ L++ ++ + +NA+ I+K+I E GSF YIW FV +K I+++++Y R VP ++PKAE
Sbjct: 238 STLLSDLKLRAVIENARQILKVIEEYGSFDKYIWSFVKNKAIVSKFRYQRQVPAKTPKAE 297
Query: 256 ALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDHLVDCYRHDECVSLAER 303
+SKD+V+RGFR VGP +V+SFMQAAG+T DHL C+R C+ ER
Sbjct: 298 VISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLTSCFRFHHCIFEHER 345
>AT5G44680.1 | Symbols: | DNA glycosylase superfamily protein |
chr5:18024461-18025893 REVERSE LENGTH=353
Length = 353
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 97/200 (48%), Positives = 143/200 (71%), Gaps = 2/200 (1%)
Query: 102 QQLNTEPGELKRCNWVTKNSDKAYIEFHDECWGVPAYDDNKLFELLALSGLLMDYNWTEI 161
+ LN E + KRC+++T +SD Y+ +HD+ WGVP +DDN LFELL L+G + +WT +
Sbjct: 154 KNLNVEHEKKKRCSFITTSSDPIYVAYHDKEWGVPVHDDNLLFELLVLTGAQVGSDWTSV 213
Query: 162 LRRKETLREVFAEFDPYTVAKMEEKEIMEIASNKALSLAESRVMCIADNAKCIMKIIREC 221
L+R+ T RE F+ F+ VA EK+I I ++ ++L S+V+ + DNAK I+K+ R+
Sbjct: 214 LKRRNTFREAFSGFEAELVADFNEKKIQSIVNDYGINL--SQVLAVVDNAKQILKVKRDL 271
Query: 222 GSFSSYIWGFVNHKPIINRYKYPRNVPLRSPKAEALSKDMVKRGFRFVGPVIVHSFMQAA 281
GSF+ YIWGF+ HKP+ +Y + +P+++ K+E +SKDMV+RGFRFVGP ++HS MQAA
Sbjct: 272 GSFNKYIWGFMKHKPVTTKYTSCQKIPVKTSKSETISKDMVRRGFRFVGPTVIHSLMQAA 331
Query: 282 GLTIDHLVDCYRHDECVSLA 301
GLT DHL+ C RH EC ++A
Sbjct: 332 GLTNDHLITCPRHLECTAMA 351
>AT1G15970.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:5486544-5488494 REVERSE LENGTH=352
Length = 352
Score = 221 bits (562), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 96/191 (50%), Positives = 136/191 (71%)
Query: 112 KRCNWVTKNSDKAYIEFHDECWGVPAYDDNKLFELLALSGLLMDYNWTEILRRKETLREV 171
KRC W+T +D Y+ FHDE WGVP +DD KLFELL LSG L + +WT+IL R+ LREV
Sbjct: 145 KRCAWITPKADPCYVAFHDEEWGVPVHDDKKLFELLCLSGALAELSWTDILSRRHILREV 204
Query: 172 FAEFDPYTVAKMEEKEIMEIASNKALSLAESRVMCIADNAKCIMKIIRECGSFSSYIWGF 231
F +FDP VA++ +K++ + L+E ++ I DN++ + KII ECGS Y+W F
Sbjct: 205 FMDFDPVAVAELNDKKLTAPGTAAISLLSEVKIRSILDNSRHVRKIIAECGSLKKYMWNF 264
Query: 232 VNHKPIINRYKYPRNVPLRSPKAEALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDHLVDC 291
VN+KP ++++Y R VP+++ KAE +SKD+V+RGFR V P +++SFMQAAGLT DHL+ C
Sbjct: 265 VNNKPTQSQFRYQRQVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGLTNDHLIGC 324
Query: 292 YRHDECVSLAE 302
+R+ +C AE
Sbjct: 325 FRYQDCCVDAE 335
>AT1G80850.1 | Symbols: | DNA glycosylase superfamily protein |
chr1:30385607-30387272 REVERSE LENGTH=327
Length = 327
Score = 214 bits (546), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 97/193 (50%), Positives = 136/193 (70%), Gaps = 4/193 (2%)
Query: 112 KRCNWVTKNSDKAYIEFHDECWGVPAYDDNKLFELLALSGLLMDYNWTEILRRKETLREV 171
KRC W+T SD+ YI FHDE WGVP +DD +LFELL+LSG L + +W +IL +++ REV
Sbjct: 134 KRCAWITPKSDQCYIAFHDEEWGVPVHDDKRLFELLSLSGALAELSWKDILSKRQLFREV 193
Query: 172 FAEFDPYTVAKMEEKEIM--EIASNKALSLAESRVMCIADNAKCIMKIIRECGSFSSYIW 229
F +FDP ++++ K+I EIA+ LS E ++ I +NA + KII GSF YIW
Sbjct: 194 FMDFDPIAISELTNKKITSPEIAATTLLS--EQKLRSILENANQVCKIIGAFGSFDKYIW 251
Query: 230 GFVNHKPIINRYKYPRNVPLRSPKAEALSKDMVKRGFRFVGPVIVHSFMQAAGLTIDHLV 289
FVN KP ++++YPR VP+++ KAE +SKD+V+RGFR V P +++SFMQ AGLT DHL
Sbjct: 252 NFVNQKPTQSQFRYPRQVPVKTSKAELISKDLVRRGFRSVSPTVIYSFMQTAGLTNDHLT 311
Query: 290 DCYRHDECVSLAE 302
C+RH +C++ E
Sbjct: 312 CCFRHHDCMTKDE 324
>AT3G12710.1 | Symbols: | DNA glycosylase superfamily protein |
chr3:4040572-4041828 REVERSE LENGTH=312
Length = 312
Score = 210 bits (535), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/210 (47%), Positives = 137/210 (65%), Gaps = 3/210 (1%)
Query: 96 TAAKTAQQLNTEPG-ELKRCNWVTKNSDKAYIEFHDECWGVPAYDDNKLFELLALSGLLM 154
T++K LN P +RC+++T SD Y+ +HDE WGVP +DD LFELL LSG +
Sbjct: 105 TSSKVVPLLNPNPNPHPQRCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQV 164
Query: 155 DYNWTEILRRKETLREVFAEFDPYTVAKMEEKEIMEIASNKALSLAESRVMCIADNAKCI 214
+WT LR++ R+ F EF+ VAK+ EKE+ I+ + + S+V + +NAK I
Sbjct: 165 GSDWTSTLRKRHDYRKAFMEFEAEVVAKLTEKEMNAISIEYKIEM--SKVRGVVENAKKI 222
Query: 215 MKIIRECGSFSSYIWGFVNHKPIINRYKYPRNVPLRSPKAEALSKDMVKRGFRFVGPVIV 274
++I + S Y+WGFVNHKPI YK +P+++ K+E++SKDMV+RGFRFVGP +V
Sbjct: 223 VEIKKAFVSLEKYLWGFVNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVV 282
Query: 275 HSFMQAAGLTIDHLVDCYRHDECVSLAERP 304
HSFMQAAGLT DHL+ C RH C LA P
Sbjct: 283 HSFMQAAGLTNDHLITCCRHAPCTLLATNP 312