Miyakogusa Predicted Gene

Lj4g3v1107690.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1107690.1 Non Chatacterized Hit- tr|I3SK89|I3SK89_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.53,0,no
description,NULL; seg,NULL; SNARE,Target SNARE coiled-coil domain;
Syntaxin,Syntaxin, N-terminal;,CUFF.48476.1
         (273 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 | Synt...   309   2e-84
AT4G17730.1 | Symbols: SYP23, ATSYP23 | syntaxin of plants  23 |...   296   9e-81
AT4G17730.2 | Symbols: SYP23, ATSYP23 | syntaxin of plants  23 |...   295   2e-80
AT5G16830.1 | Symbols: SYP21, ATSYP21, PEP12, ATPEP12, PEP12P | ...   249   2e-66
AT1G32270.1 | Symbols: ATSYP24, SYP24 | syntaxin, putative | chr...   154   4e-38

>AT5G46860.1 | Symbols: VAM3, ATVAM3, SYP22, ATSYP22, SGR3 |
           Syntaxin/t-SNARE family protein | chr5:19012342-19013795
           REVERSE LENGTH=268
          Length = 268

 Score =  309 bits (791), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 163/255 (63%), Positives = 182/255 (71%), Gaps = 7/255 (2%)

Query: 1   MSFQDIEAGRPFGSRCGPING-KQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDTPEL 59
           MSFQD+E+GR   +R    NG +QD TQAVA+GIFQINT VSTFQRLVNTLGTPKDTPEL
Sbjct: 1   MSFQDLESGRGRSTR--KFNGGRQDSTQAVASGIFQINTGVSTFQRLVNTLGTPKDTPEL 58

Query: 60  REKLHKTRLHIGQLVKDTSAKLKQASDIDHHVEVNASKKIADAKLAKDFQAVLKEFQKAQ 119
           REKLHKTRLHIGQLVKDTSAKLK+AS+ DH   VN SKKIADAKLA+DFQAVLKEFQKAQ
Sbjct: 59  REKLHKTRLHIGQLVKDTSAKLKEASETDHQSGVNPSKKIADAKLARDFQAVLKEFQKAQ 118

Query: 120 RLAAERETAYTPFVPQAVLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLDXXXXXX 179
           + AAERET YTPFVPQ+ LPSSYTA EV    DK PEQRA L ES+RQE++ LD      
Sbjct: 119 QTAAERETTYTPFVPQSALPSSYTAGEV----DKVPEQRAQLQESKRQELVLLDNEIAFN 174

Query: 180 XXXXXXXXXXXXXXXXXXXXVNEIFKDLAVLVHEQGAMIDDIGSNIENSHXXXXXXXXXX 239
                               VNEIFKDLAVLV++QG MIDDIG++I+NS           
Sbjct: 175 EAVIEEREQGIQEIHQQIGEVNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQL 234

Query: 240 XXXXXXXRSNSSLAC 254
                  +SNSSL C
Sbjct: 235 VQAAKTQKSNSSLTC 249


>AT4G17730.1 | Symbols: SYP23, ATSYP23 | syntaxin of plants  23 |
           chr4:9865351-9866635 FORWARD LENGTH=255
          Length = 255

 Score =  296 bits (758), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 154/233 (66%), Positives = 175/233 (75%), Gaps = 4/233 (1%)

Query: 1   MSFQDIEAGRPFG-SRCGPING---KQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDT 56
           MSFQD+EAGR    +    ING   +QD TQ VA+GIFQINT+VSTF RLVNTLGTPKDT
Sbjct: 1   MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDT 60

Query: 57  PELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHVEVNASKKIADAKLAKDFQAVLKEFQ 116
           PELREKLHKTRL+IGQLVKDTSAKLK+AS+ DH   VN  KKI DAKLAKDFQAVLKEFQ
Sbjct: 61  PELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQ 120

Query: 117 KAQRLAAERETAYTPFVPQAVLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLDXXX 176
           KAQRLAAERET Y P V +  LPSSYT+SE+D+  DK PEQRALLVES+RQE++ LD   
Sbjct: 121 KAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDNEI 180

Query: 177 XXXXXXXXXXXXXXXXXXXXXXXVNEIFKDLAVLVHEQGAMIDDIGSNIENSH 229
                                  V+EIFKDLAVLVH+QG MIDDIG++I+NS+
Sbjct: 181 AFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSY 233


>AT4G17730.2 | Symbols: SYP23, ATSYP23 | syntaxin of plants  23 |
           chr4:9865351-9866717 FORWARD LENGTH=262
          Length = 262

 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/233 (66%), Positives = 175/233 (75%), Gaps = 4/233 (1%)

Query: 1   MSFQDIEAGRPFG-SRCGPING---KQDPTQAVAAGIFQINTAVSTFQRLVNTLGTPKDT 56
           MSFQD+EAGR    +    ING   +QD TQ VA+GIFQINT+VSTF RLVNTLGTPKDT
Sbjct: 1   MSFQDLEAGRGRSLASSRNINGGGSRQDTTQDVASGIFQINTSVSTFHRLVNTLGTPKDT 60

Query: 57  PELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHVEVNASKKIADAKLAKDFQAVLKEFQ 116
           PELREKLHKTRL+IGQLVKDTSAKLK+AS+ DH   VN  KKI DAKLAKDFQAVLKEFQ
Sbjct: 61  PELREKLHKTRLYIGQLVKDTSAKLKEASETDHQRGVNQKKKIVDAKLAKDFQAVLKEFQ 120

Query: 117 KAQRLAAERETAYTPFVPQAVLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLDXXX 176
           KAQRLAAERET Y P V +  LPSSYT+SE+D+  DK PEQRALLVES+RQE++ LD   
Sbjct: 121 KAQRLAAERETVYAPLVHKPSLPSSYTSSEIDVNGDKHPEQRALLVESKRQELVLLDNEI 180

Query: 177 XXXXXXXXXXXXXXXXXXXXXXXVNEIFKDLAVLVHEQGAMIDDIGSNIENSH 229
                                  V+EIFKDLAVLVH+QG MIDDIG++I+NS+
Sbjct: 181 AFNEAVIEEREQGIQEIQQQIGEVHEIFKDLAVLVHDQGNMIDDIGTHIDNSY 233


>AT5G16830.1 | Symbols: SYP21, ATSYP21, PEP12, ATPEP12, PEP12P |
           syntaxin of plants  21 | chr5:5533076-5535152 REVERSE
           LENGTH=279
          Length = 279

 Score =  249 bits (636), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 136/261 (52%), Positives = 171/261 (65%), Gaps = 8/261 (3%)

Query: 1   MSFQDIEAG-------RPFGSRCGPINGKQDPTQAVAAGIFQINTAVSTFQRLVNTLGTP 53
           MSFQD+EAG       R  G R    + + DP+Q VAAGIF+I+TAV++F RLVN++GTP
Sbjct: 1   MSFQDLEAGTRSPAPNRFTGGRQQRPSSRGDPSQEVAAGIFRISTAVNSFFRLVNSIGTP 60

Query: 54  KDTPELREKLHKTRLHIGQLVKDTSAKLKQASDIDHHVEVNASKKIADAKLAKDFQAVLK 113
           KDT ELR+KL KTRL I +LVK+TSAKLK+AS+ D H   +  KKIADAKLAKDFQ+VLK
Sbjct: 61  KDTLELRDKLQKTRLQISELVKNTSAKLKEASEADLHGSASQIKKIADAKLAKDFQSVLK 120

Query: 114 EFQKAQRLAAERETAYTPFVPQAVLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLD 173
           EFQKAQRLAAERE  YTP V + + P+SY A E+D  S +  +Q+ALL++SRRQEV+FLD
Sbjct: 121 EFQKAQRLAAEREITYTPVVTKEI-PTSYNAPELDTESLRISQQQALLLQSRRQEVVFLD 179

Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXXXVNEIFKDLAVLVHEQGAMIDDIGSNIENSHXXXX 233
                                     VN +FKDLA++V+ QG ++DDI SN++NSH    
Sbjct: 180 NEITFNEAIIEEREQGIREIEDQIRDVNGMFKDLALMVNHQGNIVDDISSNLDNSHAATT 239

Query: 234 XXXXXXXXXXXXXRSNSSLAC 254
                        RSNSSL C
Sbjct: 240 QATVQLRKAAKTQRSNSSLTC 260


>AT1G32270.1 | Symbols: ATSYP24, SYP24 | syntaxin, putative |
           chr1:11642593-11644962 FORWARD LENGTH=416
          Length = 416

 Score =  154 bits (390), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/211 (45%), Positives = 123/211 (58%), Gaps = 21/211 (9%)

Query: 32  GIFQINTAVS-TFQRLVNTLGTPKDTPELREKL--------------HKTRLHIGQLVKD 76
           G+++I+  +S  F+ +V  L T    P +R  L              HK  L IGQLVKD
Sbjct: 107 GVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSNSTGGHKKMLLIGQLVKD 166

Query: 77  TSAKLKQASDIDHHVEVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQA 136
           TSA L++AS+ DH  +V  SKKIADAKLAKDF+A LKEFQKAQ +  ERET+Y PF P+ 
Sbjct: 167 TSANLREASETDHRRDVAQSKKIADAKLAKDFEAALKEFQKAQHITVERETSYIPFDPKG 226

Query: 137 VLPSSYTASEVDIGSDKTPEQRALLVESRRQEVLFLDXXXXXXXXXXXXXXXXXXXXXXX 196
               S+++SEVDIG D++ EQR L+ ESRRQE++ LD                       
Sbjct: 227 ----SFSSSEVDIGYDRSQEQRVLM-ESRRQEIVLLDNEISLNEARIEAREQGIQEVKHQ 281

Query: 197 XXXVNEIFKDLAVLVHEQGAMIDDIGSNIEN 227
              V E+FKDLAV+V  QG  IDDI   I+N
Sbjct: 282 ISEVMEMFKDLAVMVDHQGT-IDDIDEKIDN 311