Miyakogusa Predicted Gene

Lj4g3v1107610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1107610.1 Non Chatacterized Hit- tr|B9RV23|B9RV23_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32,7e-16,zf-CCCH,Zinc finger, CCCH-type; no description,NULL; ZINC
FINGER (CCCH-TYPE) FAMILY PROTEIN,NULL; CC,CUFF.48463.1
         (382 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32360.1 | Symbols:  | Zinc finger (CCCH-type) family protein...   336   1e-92
AT3G19360.1 | Symbols:  | Zinc finger (CCCH-type) family protein...   151   6e-37
AT2G35430.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...   137   1e-32
AT1G68200.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    49   5e-06
AT1G68200.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type fami...    49   5e-06

>AT1G32360.1 | Symbols:  | Zinc finger (CCCH-type) family protein |
           chr1:11673325-11675162 FORWARD LENGTH=384
          Length = 384

 Score =  336 bits (862), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 201/392 (51%), Positives = 228/392 (58%), Gaps = 33/392 (8%)

Query: 7   GNVVQIITTXXXXXXXXXXXXXDSW---PGDQADWATEDEY-RYWNGNEDTAPSNGDXXX 62
           G+VV +I T             D+W    GD A WATED+Y R W  N D   ++GD   
Sbjct: 10  GDVVHVIPTNNPPP--------DNWFPNLGDSAVWATEDDYNRAWAMNPDN--TSGDNNG 59

Query: 63  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGKMFFKTKLCCKFRAGTCPYVTNCNFAH 122
                                          IGKMFFKTKLCCKFRAGTCPY+TNCNFAH
Sbjct: 60  PPNKKTRGSPSSSSATTTSAASNRTKA----IGKMFFKTKLCCKFRAGTCPYITNCNFAH 115

Query: 123 SIEELRRPPPNWQEIVAAHEEEKAVLMSE--------PREEFQIPTIGSYAGDVSQRSYK 174
           ++EELRRPPPNWQEIVAAHEEE++  M          PREEFQIP++ S   + S RS+K
Sbjct: 116 TVEELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSSTAE-SGRSFK 174

Query: 175 GRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAISLXXXXXXXXXXXXXXXXXXXXXXX 234
           GRHCKKFYTEEGCPYG+SCTFLHDE S+NRESVAISL                       
Sbjct: 175 GRHCKKFYTEEGCPYGESCTFLHDEASRNRESVAISL-GPGGYGSGGGGGSGGGSVGGGG 233

Query: 235 XXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRY 294
                                  KPSNWKTRICNKWE+TGYCPFG KCHFAHGA ELHR+
Sbjct: 234 SSSNVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRF 293

Query: 295 GGGLMEGESRDTASAIAADTKQGVPS-KTLADNVVASATPIAHS--DIYHIGVPSQRP-S 350
           GGGL+E E +D  S    DTKQ V + K L+D     +  + H+    YH GV  QR  S
Sbjct: 294 GGGLVEEEGKDGVSP-NPDTKQTVQNPKGLSDTTTLLSPGVPHNADASYHTGVALQRASS 352

Query: 351 IVLQRPGQRTLQKWKGPDKISRIYGDWIDDIE 382
            V Q+PG RT QKWKGP KISRIYGDWIDDIE
Sbjct: 353 AVTQKPGIRTHQKWKGPAKISRIYGDWIDDIE 384


>AT3G19360.1 | Symbols:  | Zinc finger (CCCH-type) family protein |
           chr3:6707544-6708864 FORWARD LENGTH=386
          Length = 386

 Score =  151 bits (382), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/294 (35%), Positives = 137/294 (46%), Gaps = 27/294 (9%)

Query: 95  GKMFFKTKLCCKFRAGTCPYVTNCNFAHSIEELRRPPPNWQEIV----AAHEEEKAVLMS 150
             +F+KT++C KFRAGTC     CNFAH IE+LR+PP NWQEIV    A  + E+     
Sbjct: 101 ANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERERERE 160

Query: 151 EPREEFQI-PTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLHDEQSKNRESVAI 209
             RE   + P + +   D  +   + + C+KF   E CPYGD C F+H++ SK RE    
Sbjct: 161 RERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRED--- 217

Query: 210 SLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKPSNWKTRICNK 269
           S                                               K   WKTR+C K
Sbjct: 218 SGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGVVKTVYWKTRLCMK 277

Query: 270 WEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQGVPSKTLADNVVA 329
           +++TG CPFG+KCHFAHG  ELH    G +EGE+ +   A+A+  KQ V    +  N   
Sbjct: 278 FDITGQCPFGDKCHFAHGQAELHN-SVGRVEGEAMN---AVASVNKQAV----VPANEAF 329

Query: 330 SATPIAHSDIYHIGVPSQRPSIVLQRPGQRT--LQKWKGPDKISRIYGDWIDDI 381
           +  PI        G         L   G+R   L KW    KI+RIYGDWIDD+
Sbjct: 330 AMKPITQVTADSSG---------LNEEGRRKKCLLKWSDSKKINRIYGDWIDDL 374


>AT2G35430.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr2:14901014-14902257 REVERSE LENGTH=252
          Length = 252

 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/127 (58%), Positives = 86/127 (67%), Gaps = 16/127 (12%)

Query: 258 KPSNWKTRICNKWEMTGYCPFGNKCHFAHGATELHRYGGGLMEGESRDTASAIAADTKQG 317
           K  NWKTRICNKW+ TGYCPFG+ CHFAHG +ELH +GGGL+EGE +   SA   DTKQ 
Sbjct: 140 KSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTFGGGLVEGECKIGTSA-TLDTKQ- 197

Query: 318 VPSKTLADNVVASATPIAHSDIYHIGVPSQR-PSIVLQRP-GQRTLQKWKGPDKISRIYG 375
              +   D V +  +P         GV SQR  S V Q+P G RT +KWKGPDKISR+YG
Sbjct: 198 ---RGQVDTVTSLVSP---------GVSSQRTSSAVTQKPNGVRTQRKWKGPDKISRVYG 245

Query: 376 DWIDDIE 382
           DWIDDIE
Sbjct: 246 DWIDDIE 252



 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/172 (38%), Positives = 80/172 (46%), Gaps = 40/172 (23%)

Query: 33  GDQADWATEDEY-RYWNGNEDTAPSNGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 91
           GD + WATED+Y R W  N D A S                                   
Sbjct: 30  GDSSVWATEDDYSRVWAINSDGAESP-------------------------SKKTRSSSS 64

Query: 92  XXIGKMFFKTKLCCKFRAGTCPY-VTNCNFAHSIEELR---RPPPNWQEIV--AAHEEEK 145
             IGK FFKTKLC KFRAGTCPY  ++C+FAHS EELR    PPPNWQE V  A+   E 
Sbjct: 65  SEIGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRES 124

Query: 146 AVLMSEPREEFQIPTIGSYAGDVSQRSYKGRHCKKFYTEEGCPYGDSCTFLH 197
             +   PR        G+ A  +   ++K R C K+ T   CP+G  C F H
Sbjct: 125 FAVSLGPR--------GNVAQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAH 168


>AT1G68200.1 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:25562118-25563948 FORWARD LENGTH=308
          Length = 308

 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 263 KTRICNKWEMTGYCPFGNKCHFAHGATEL 291
           KT +CNKW+ TG CP+G+ C FAHG  EL
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252


>AT1G68200.2 | Symbols:  | Zinc finger C-x8-C-x5-C-x3-H type family
           protein | chr1:25562118-25563948 FORWARD LENGTH=307
          Length = 307

 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 22/29 (75%)

Query: 263 KTRICNKWEMTGYCPFGNKCHFAHGATEL 291
           KT +CNKW+ TG CP+G+ C FAHG  EL
Sbjct: 223 KTELCNKWQETGTCPYGDHCQFAHGIKEL 251