Miyakogusa Predicted Gene

Lj4g3v1083800.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1083800.1 Non Chatacterized Hit- tr|I1JC59|I1JC59_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,95,0,CLATHRIN COAT
ASSEMBLY PROTEIN AP-1,NULL; CLATHRIN COAT ASSEMBLY PROTEIN,NULL;
CLAT_ADAPTOR_M_2,Clat,CUFF.48373.1
         (220 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium...   424   e-119
AT1G10730.1 | Symbols:  | Clathrin adaptor complexes medium subu...   389   e-109
AT5G46630.1 | Symbols:  | Clathrin adaptor complexes medium subu...   202   1e-52
AT5G46630.2 | Symbols:  | Clathrin adaptor complexes medium subu...   167   4e-42
AT4G24550.2 | Symbols:  | Clathrin adaptor complexes medium subu...   142   2e-34
AT4G24550.1 | Symbols:  | Clathrin adaptor complexes medium subu...    93   1e-19
AT4G24550.3 | Symbols:  | Clathrin adaptor complexes medium subu...    93   1e-19
AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium ...    75   3e-14

>AT1G60780.1 | Symbols: HAP13 | Clathrin adaptor complexes medium
           subunit family protein | chr1:22369289-22371885 REVERSE
           LENGTH=428
          Length = 428

 Score =  424 bits (1090), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 197/220 (89%), Positives = 212/220 (96%)

Query: 1   MPECKLGLNDRVLLEAQGRTAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 60
           MPECKLGLNDRVLLEAQGR  KGKAIDLEDIKFHQCVRLARFENDRTISFIPPDG+FDLM
Sbjct: 209 MPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLM 268

Query: 61  TYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDSTNPTV 120
           TYRL+TQVKPL WVEAQ+E HS+SR+E+++KARSQFKERSTATNVEIELPVP D++NPTV
Sbjct: 269 TYRLSTQVKPLIWVEAQIESHSRSRVEMLIKARSQFKERSTATNVEIELPVPTDASNPTV 328

Query: 121 RTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRVKFEIP 180
           RTS+GSASYAPEKDALVWKI+SFPG KEYMLRAEF LPSIT E+ATPERKAPIRVKFEIP
Sbjct: 329 RTSLGSASYAPEKDALVWKIKSFPGNKEYMLRAEFHLPSITAEEATPERKAPIRVKFEIP 388

Query: 181 YFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 220
           YFTVSGIQVRYLKIIEKSGYQ+LPWVRYITMAGEYELRL+
Sbjct: 389 YFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLV 428


>AT1G10730.1 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr1:3565463-3567779 FORWARD LENGTH=428
          Length = 428

 Score =  389 bits (999), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/220 (82%), Positives = 202/220 (91%)

Query: 1   MPECKLGLNDRVLLEAQGRTAKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 60
           MPECKLGLNDR+LLEAQGR  KGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM
Sbjct: 209 MPECKLGLNDRILLEAQGRAIKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLM 268

Query: 61  TYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDSTNPTV 120
           TYRL+TQVKPL WVEA +E+HS+SR+E++VKARSQFK+RS AT+VEIELPVP D+ NP V
Sbjct: 269 TYRLSTQVKPLIWVEAHIERHSRSRVEMLVKARSQFKDRSYATSVEIELPVPTDAYNPDV 328

Query: 121 RTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRVKFEIP 180
           RTS+GSA+YAPEKDALVWKI+ F G KE+ L+A+F LPSI  E+ATPERKAPIRVKFEIP
Sbjct: 329 RTSLGSAAYAPEKDALVWKIQYFYGNKEHTLKADFHLPSIAAEEATPERKAPIRVKFEIP 388

Query: 181 YFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELRLI 220
            F VSGIQVRYLKIIEKSGYQ+ PWVRYITMAGEYELRL+
Sbjct: 389 KFIVSGIQVRYLKIIEKSGYQAHPWVRYITMAGEYELRLM 428


>AT5G46630.1 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr5:18920580-18923252 FORWARD
           LENGTH=438
          Length = 438

 Score =  202 bits (514), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 144/223 (64%), Gaps = 6/223 (2%)

Query: 1   MPECKLGLNDRVLLEAQG----RTAK-GKAIDLEDIKFHQCVRLARFENDRTISFIPPDG 55
           MP+ KLGLND++ LE +     R AK GK I+L+D+ FHQCV L RF +++T+SF+PPDG
Sbjct: 216 MPDLKLGLNDKIGLEKESEMKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDG 275

Query: 56  SFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDS 115
            F+LM YR+   V   F V   +++  ++R+E+ VK +S F  +  A  V +++PVP  +
Sbjct: 276 EFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQT 335

Query: 116 TNPTVRTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRV 175
                + + G A Y P  D LVWKIR FPG  E  L AE  L S   E  +  R  PI++
Sbjct: 336 AKTNFQVTTGRAKYNPSIDCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTR-PPIQM 394

Query: 176 KFEIPYFTVSGIQVRYLKIIEKSGYQSLPWVRYITMAGEYELR 218
           +F++P FT SG++VR+LK+ EKSGY ++ WVRYIT AG YE+R
Sbjct: 395 EFQVPMFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIR 437


>AT5G46630.2 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr5:18920580-18923060 FORWARD
           LENGTH=441
          Length = 441

 Score =  167 bits (424), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 86/199 (43%), Positives = 125/199 (62%), Gaps = 6/199 (3%)

Query: 1   MPECKLGLNDRVLLEAQG----RTAK-GKAIDLEDIKFHQCVRLARFENDRTISFIPPDG 55
           MP+ KLGLND++ LE +     R AK GK I+L+D+ FHQCV L RF +++T+SF+PPDG
Sbjct: 216 MPDLKLGLNDKIGLEKESEMKSRPAKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDG 275

Query: 56  SFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDS 115
            F+LM YR+   V   F V   +++  ++R+E+ VK +S F  +  A  V +++PVP  +
Sbjct: 276 EFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKVKSVFGAKMFALGVVVKIPVPKQT 335

Query: 116 TNPTVRTSMGSASYAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKAPIRV 175
                + + G A Y P  D LVWKIR FPG  E  L AE  L S   E  +  R  PI++
Sbjct: 336 AKTNFQVTTGRAKYNPSIDCLVWKIRKFPGQTESTLSAEIELISTMGEKKSWTR-PPIQM 394

Query: 176 KFEIPYFTVSGIQVRYLKI 194
           +F++P FT SG++VR+LK+
Sbjct: 395 EFQVPMFTASGLRVRFLKV 413


>AT4G24550.2 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr4:12675873-12678903 FORWARD
           LENGTH=451
          Length = 451

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 123/229 (53%), Gaps = 12/229 (5%)

Query: 2   PECKLGLNDRVLLEAQGRT------AKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDG 55
           PE +L LN+ + +   GR+      + G  + L+D  FH+ VRL  F++DRT+S +PPDG
Sbjct: 224 PEIRLALNEDLNIGRGGRSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLVPPDG 283

Query: 56  SFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDS 115
            F +M YR+  + KP F V   +E+  + + E+++K R++F     A  + +++P+P  +
Sbjct: 284 EFPVMNYRMTQEFKPPFHVNTLIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYT 343

Query: 116 TNPTVRTSMGSAS----YAPEKDALVWKIRSFPGGKEYMLRAEFLLPSITDEDATPERKA 171
           +  +     G+A     +      L W ++   GG E+ LRA+         + T E   
Sbjct: 344 SRASFELEPGAAGQRTDFKESNKMLEWNLKKIVGGGEHTLRAKLTFSQEFHGNITKE-AG 402

Query: 172 PIRVKFEIPYFTVSGIQVRYLKIIEK-SGYQSLPWVRYITMAGEYELRL 219
           P+ + F IP + VS +QV+YL+I +K S Y    WVRY+T A  Y  R+
Sbjct: 403 PVSMTFTIPMYNVSKLQVKYLQIAKKSSSYNPYRWVRYVTQANSYVARI 451


>AT4G24550.1 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr4:12675873-12678526 FORWARD
           LENGTH=380
          Length = 380

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 10/150 (6%)

Query: 2   PECKLGLNDRVLLEAQGRT------AKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDG 55
           PE +L LN+ + +   GR+      + G  + L+D  FH+ VRL  F++DRT+S +PPDG
Sbjct: 224 PEIRLALNEDLNIGRGGRSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLVPPDG 283

Query: 56  SFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDS 115
            F +M YR+  + KP F V   +E+  + + E+++K R++F     A  + +++P+P  +
Sbjct: 284 EFPVMNYRMTQEFKPPFHVNTLIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYT 343

Query: 116 TNPTVRTSMGSAS----YAPEKDALVWKIR 141
           +  +     G+A     +      L W ++
Sbjct: 344 SRASFELEPGAAGQRTDFKESNKMLEWNLK 373


>AT4G24550.3 | Symbols:  | Clathrin adaptor complexes medium subunit
           family protein | chr4:12675873-12678689 FORWARD
           LENGTH=385
          Length = 385

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 81/150 (54%), Gaps = 10/150 (6%)

Query: 2   PECKLGLNDRVLLEAQGRT------AKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDG 55
           PE +L LN+ + +   GR+      + G  + L+D  FH+ VRL  F++DRT+S +PPDG
Sbjct: 224 PEIRLALNEDLNIGRGGRSVYDYRSSSGSGVILDDCNFHESVRLDSFDSDRTLSLVPPDG 283

Query: 56  SFDLMTYRLNTQVKPLFWVEAQVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDS 115
            F +M YR+  + KP F V   +E+  + + E+++K R++F     A  + +++P+P  +
Sbjct: 284 EFPVMNYRMTQEFKPPFHVNTLIEEAGRLKAEVIIKIRAEFPSDIIANTITVQMPLPNYT 343

Query: 116 TNPTVRTSMGSAS----YAPEKDALVWKIR 141
           +  +     G+A     +      L W ++
Sbjct: 344 SRASFELEPGAAGQRTDFKESNKMLEWNLK 373


>AT1G56590.1 | Symbols: ZIP4 | Clathrin adaptor complexes medium
           subunit family protein | chr1:21202250-21204697 REVERSE
           LENGTH=415
          Length = 415

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 95/199 (47%), Gaps = 20/199 (10%)

Query: 28  LEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLNTQVKPLFWVEAQVEKHSKS-RI 86
           LED++FH CVR   +E+ + +SF+PPDG F LM+YR+        +V+ Q+   S + RI
Sbjct: 230 LEDMRFHPCVRYRPWESHQVLSFVPPDGEFKLMSYRVKKLKNTPVYVKPQITSDSGTCRI 289

Query: 87  EIMVKARSQFKERSTATNVEIELPVPVDSTNPTVRTSMGSASYAPEKDALVWKIRSFPGG 146
            ++V  RS   +   +  +  +LP  V S +  + ++ G+ +    K    W I   P  
Sbjct: 290 SVLVGIRSDPGKTIESITLSFQLPHCVSSAD--LSSNHGTVTILSNKTC-TWTIGRIPKD 346

Query: 147 KEYMLRAEFLL-PSITDEDATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQSLP- 204
           K   L     L P +      P  K    + F+I    +SG++      IEK   Q++P 
Sbjct: 347 KTPCLSGTLALEPGLERLHVFPTFK----LGFKIMGIALSGLR------IEKLDLQTIPP 396

Query: 205 ----WVRYITMAGEYELRL 219
                 R  T AGE+++RL
Sbjct: 397 RLYKGFRAQTRAGEFDVRL 415