Miyakogusa Predicted Gene
- Lj4g3v1073530.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1073530.1 Non Chatacterized Hit- tr|I1HXY1|I1HXY1_BRADI
Uncharacterized protein OS=Brachypodium distachyon GN=,63.75,3e-19,RNA
PROCESSING PROTEIN LD23810P,NULL; coiled-coil,NULL;
seg,NULL,CUFF.48363.1
(914 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing... 1163 0.0
AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing... 1044 0.0
AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A... 60 8e-09
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 59 1e-08
AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47... 58 4e-08
AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B... 57 7e-08
AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B... 57 7e-08
AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A... 56 1e-07
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein ... 56 2e-07
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 55 2e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 54 5e-07
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 52 2e-06
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 52 3e-06
AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179 F... 51 3e-06
>AT5G25060.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:8634219-8639984 REVERSE LENGTH=946
Length = 946
Score = 1163 bits (3008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/919 (65%), Positives = 679/919 (73%), Gaps = 35/919 (3%)
Query: 1 MSSFSITRKKTPFQKHXXXXXXXXXXXXXXXXXLYAEFVESFQGDITPGSKTFVRGGTIN 60
MSSFSITRKKTPFQKH LY EFVESFQGD +KTFVRGGTIN
Sbjct: 1 MSSFSITRKKTPFQKHREEEEARKKKAEDETARLYQEFVESFQGD-NATTKTFVRGGTIN 59
Query: 61 PNEKLKDDSEGEKSKDGVSIPKKGSRYVPSFIPPPLATXXXXXXXXXXXXXXXXXXXXXX 120
P +K K DSEGEKSKDG S+ KKGSRYVPSF+PPPLA+
Sbjct: 60 PGDKPKVDSEGEKSKDGGSVSKKGSRYVPSFLPPPLASKGKEPEKKREEERPREREKGKT 119
Query: 121 XNIDFFMEELKHEQEMREKRNQERENWRDGLPVEHSTTVSRFDELPDDFDPSGKLPGSFD 180
NID FMEELK EQEMRE+RNQ+R+ D P SRFDELPDDFDPSG+ PGSFD
Sbjct: 120 RNIDNFMEELKREQEMRERRNQDRDRQGDSSPS------SRFDELPDDFDPSGR-PGSFD 172
Query: 181 DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 240
DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRT+EE+RRQRNCGFV+FMN
Sbjct: 173 DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTDEEKRRQRNCGFVSFMN 232
Query: 241 RADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGHMAIRSKEGSTVILXXXX 300
RADGQAAKDEMQG++VYEYELKIGWGK+V GHMAIRSKEG ++
Sbjct: 233 RADGQAAKDEMQGIIVYEYELKIGWGKAVSLPSQALPAPPPGHMAIRSKEGCNLVFSGQT 292
Query: 301 XXXXXXXX-XQNSELVLTPNVPDIMVTPPEDDHLRHLIDTMALYVLDGGCAFEQAIMERG 359
QNSELVLTPNVPDI V PED+HLRH+IDT+ALYVLDG CAFEQAIMERG
Sbjct: 293 GPPIITSVPNQNSELVLTPNVPDITVVTPEDEHLRHVIDTLALYVLDGECAFEQAIMERG 352
Query: 360 RGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPQLPPSRS 419
RGNPLF F+F LGSKEHTYYVWRLYSFAQGDTLQRWRTEP+IMITGSGRWIPP LP +R+
Sbjct: 353 RGNPLFKFMFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPYIMITGSGRWIPPPLPVTRT 412
Query: 420 PDHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDRLRALTLERSQIKEAMGFALDNADA 479
+HEKES ST+A GR+RR E ERTLTD QRDEFED LRALTLERSQIKEAMGFALDNADA
Sbjct: 413 QEHEKESASTYAAGRTRRAEVERTLTDPQRDEFEDMLRALTLERSQIKEAMGFALDNADA 472
Query: 480 AGEIVEVLTESLTLRETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEAALPDIMES 539
AGE+VEVLTESLTL+ET IPTK+ARLMLVSDILHNSSA V+NASAYRTKFEA LPDIMES
Sbjct: 473 AGEVVEVLTESLTLKETSIPTKVARLMLVSDILHNSSARVKNASAYRTKFEATLPDIMES 532
Query: 540 FNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVVPFHSI 599
FNDLYRSI GRITAEALKERVLKVLQVWADWFLFSDAY+ GLR+TFLR G SGV FHSI
Sbjct: 533 FNDLYRSITGRITAEALKERVLKVLQVWADWFLFSDAYIYGLRSTFLRSGVSGVTSFHSI 592
Query: 600 CGDAPEIEQKITSEDTVVGGKINQDAALAMGRGAATQELMNLPLAELERRCRHNGLSLVG 659
CGDAPEIE K +++ GKIN DAALA+G+GAA QELMNLP+AELERRCRHNGLSLVG
Sbjct: 593 CGDAPEIENKSYADNMSDIGKINPDAALAIGKGAARQELMNLPIAELERRCRHNGLSLVG 652
Query: 660 GREIMVARLLSLEEAEKQRVYELDDEL-KYPHGQASSAKYSSGRRETSAELEPVGYSGWN 718
GR +MV RLLSLE+ EKQR YE DE+ K+P ++ + S R N
Sbjct: 653 GRVMMVTRLLSLEDTEKQRGYEAVDEIPKHPQNHSTWEEVKSEREHIK-----------N 701
Query: 719 HYGDDDLQSQGKESVPLAPTLPIPQPELKAFTKKEKNDPVLPASKWARXXXXXXXXQRSG 778
Y + ++ KE V L T+PIPQPELKAF KEKN+ +LPASKWAR Q+
Sbjct: 702 SYAEVEM----KEPVNLPTTIPIPQPELKAFVGKEKNELILPASKWARDDDEADDEQKRS 757
Query: 779 KNLGLSYSSSGSENVGGGHIKADESESAADTSFSAHADSGLNEEQRQKLRRLEVALIEYR 838
SSSGS+N GG KAD + + A D+G++EEQRQK RR+EVALIEYR
Sbjct: 758 -------SSSGSDNTGGITFKADGEDLKGNDCVRAQPDNGMDEEQRQKRRRIEVALIEYR 810
Query: 839 ESLEERGIKNLEEIEKKVQTHRKRLQAEYGLSDSGEDGQGNXX---XXXXXXXXXXXXXK 895
E+LEE+G+KN EEIE+KV+ +RKRL+ +YGLS E + K
Sbjct: 811 ETLEEQGMKNPEEIERKVEINRKRLEVDYGLSGPNEGNRNQKSIIERKEKREDSQESSKK 870
Query: 896 RHRSPSPRGSPQHRLSSKD 914
RHR + SP + S+++
Sbjct: 871 RHRGENKSQSPPRKSSTRE 889
>AT5G10800.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr5:3412898-3418382 REVERSE LENGTH=947
Length = 947
Score = 1044 bits (2699), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/817 (67%), Positives = 625/817 (76%), Gaps = 32/817 (3%)
Query: 58 TINPNE-KLKDDSEGEKSKDGVSIPKKGSRYVPSFIPPPLATXXXXXXXXXXXXXXXXXX 116
TINPN+ KLK DS+GEKS+DG SI KKGSRYVPSF+PPPLA+
Sbjct: 60 TINPNDNKLKPDSQGEKSRDGDSISKKGSRYVPSFLPPPLASKGKGPENKRDEERSKEME 119
Query: 117 XXXXXNIDFFMEELKHEQEMREKRNQERENWRDGLPVEHSTTVSRFDELPDDFDPSGKLP 176
NID F+EELK EQE+RE+RNQ+REN RD +T+ SRFDELPD FDPSG+L
Sbjct: 120 KGKTRNIDHFVEELKREQEIRERRNQDRENSRDH--NSDNTSSSRFDELPDYFDPSGRL- 176
Query: 177 GSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 236
GS DDGDPQTTNLYV NLS KVDENFLLRTFGRFGPIASVKIMWPRTEEE+RR+R+CGFV
Sbjct: 177 GSLDDGDPQTTNLYVVNLSSKVDENFLLRTFGRFGPIASVKIMWPRTEEEKRRERHCGFV 236
Query: 237 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVXXXXXXXXXXXXGHMAIRSKEGSTVIL 296
AFMNRADG+AAK++MQG++VYEYELKIGWGK V GHMAIRSKEG +I
Sbjct: 237 AFMNRADGEAAKEKMQGIIVYEYELKIGWGKVVFLPSQALPAPPPGHMAIRSKEGCNLIF 296
Query: 297 XXXXXXXXXXXXXQNSELVLTPNVPDIMVTPPEDDHLRHLIDTMALYVLDGGCAFEQAIM 356
QNSELVLTPNVPDI V PED+HL+ +IDTMAL VLDGGCAFEQAIM
Sbjct: 297 SVTSGPPMNSVPNQNSELVLTPNVPDITVISPEDEHLKQIIDTMALNVLDGGCAFEQAIM 356
Query: 357 ERGRGNPLFNFLFVLGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPQLPP 416
ERGRGNPLFNFLF LGSKEHTYYVWRLYSFAQGDTLQRWRTEP+IMI GSGRWIPP LP
Sbjct: 357 ERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPYIMIAGSGRWIPPPLPA 416
Query: 417 SRSPDHEKESGSTHAGGRSRRVEPERTLTDAQRDEFEDRLRALTLERSQIKEAMGFALDN 476
+RSP+H KES T+A G+SR E E+TLTD+QRDEFED LRALTLERSQI+EAMGFALDN
Sbjct: 417 TRSPEHGKESRGTYAAGKSRCTEAEQTLTDSQRDEFEDMLRALTLERSQIREAMGFALDN 476
Query: 477 ADAAGEIVEVLTESLTLRETPIPTKIARLMLVSDILHNSSAPVRNASAYRTKFEAALPDI 536
A+AAGE+VEVLTESLTL+ET IPTK+ARLMLVSDI+HNSSA V+NASAYRTKFEA LPDI
Sbjct: 477 AEAAGEVVEVLTESLTLKETSIPTKVARLMLVSDIIHNSSARVKNASAYRTKFEATLPDI 536
Query: 537 MESFNDLYRSIMGRITAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRPGNSGVVPF 596
MESFNDLY S+ GRITAEAL+ERVLKVLQVWADWFLFSDAY+NGLRATFLR N GV F
Sbjct: 537 MESFNDLYHSVHGRITAEALRERVLKVLQVWADWFLFSDAYINGLRATFLRSRNFGVTSF 596
Query: 597 HSICGDAPEIEQKITSEDTVVGGKINQDAALAMGRGAATQELMNLPLAELERRCRHNGLS 656
HSICGDAP+IE+K + KINQDAALAMG GAA QELMN P++ELERRCRHNGLS
Sbjct: 597 HSICGDAPDIEKKGLIGNMNDADKINQDAALAMGEGAARQELMNRPISELERRCRHNGLS 656
Query: 657 LVGGREIMVARLLSLEEAEKQRVYELDDE-LKYPHGQAS--SAKYSSGRRETSAELEPVG 713
L+GGRE+MVARL+ L++AEKQR YE+ DE KY G ++ R +TS +
Sbjct: 657 LLGGREMMVARLVCLKDAEKQRGYEVVDENAKYRQGHSTWEEVNIEPKRMKTSYD----- 711
Query: 714 YSGWNHYGDDDLQSQGKESVPLAPTLPIPQPELKAFTKKEKNDPVLPASKWARXXXXXXX 773
+ + +E V LA T+PIPQPELKAF KKEK D +LP S+WAR
Sbjct: 712 ------------KVETEEPVDLASTIPIPQPELKAFVKKEKIDLILPTSRWAREDDETDD 759
Query: 774 XQRSGKNLGLSYSSSGSENVGGGHIKADESESAADTSFSAHADSGLNEEQRQKLRRLEVA 833
Q+ SY SSGS+N GG K DE + AD S ++ ++ EQRQKLR +E+A
Sbjct: 760 EQKK------SY-SSGSDNAGGITFKTDEEDLKADPSVRVQPENEIDVEQRQKLRHIEIA 812
Query: 834 LIEYRESLEERGIKNLEEIEKKVQTHRKRLQAEYGLS 870
LIEYRESLEE+G+KN EEIE+KV HRKRL+A+ GLS
Sbjct: 813 LIEYRESLEEQGMKNSEEIERKVAIHRKRLEAD-GLS 848
>AT1G54080.1 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=426
Length = 426
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 188 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 247
N++VG+LSP+V + L +F F + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 205
Query: 248 KDEMQGVVVYEYELKIGWG 266
+EM G V +++ W
Sbjct: 206 INEMNGKWVSSRQIRCNWA 224
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 188 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 247
N++VG+LSP+V + L ++F F + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 145 NIFVGDLSPEVTDATLYQSFSVFSSCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 201
Query: 248 KDEMQGVVVYEYELKIGWG 266
+EM G + +++ W
Sbjct: 202 INEMNGKWLSSRQIRCNWA 220
>AT1G49600.1 | Symbols: ATRBP47A, RBP47A | RNA-binding protein 47A |
chr1:18357236-18360150 REVERSE LENGTH=445
Length = 445
Score = 57.8 bits (138), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 9/92 (9%)
Query: 177 GSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 236
GS DG+ + ++VG L V E L++ F FG + SVKI + CGFV
Sbjct: 317 GSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---------PVGKGCGFV 367
Query: 237 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
F NR + A + G V+ + +++ WG+S
Sbjct: 368 QFANRQSAEEAIGNLNGTVIGKNTVRLSWGRS 399
>AT1G17370.1 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=419
Length = 419
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 188 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 247
N++VG+LSP+V + L F + + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 196
Query: 248 KDEMQGVVVYEYELKIGW 265
DE+ G + +++ W
Sbjct: 197 IDEITGKWLGSRQIRCNW 214
>AT1G17370.2 | Symbols: UBP1B | oligouridylate binding protein 1B |
chr1:5951842-5954825 REVERSE LENGTH=416
Length = 416
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 188 NLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAA 247
N++VG+LSP+V + L F + + ++MW +++ R R GFV+F N+ D Q A
Sbjct: 140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW---DQKTGRSRGFGFVSFRNQQDAQTA 196
Query: 248 KDEMQGVVVYEYELKIGW 265
DE+ G + +++ W
Sbjct: 197 IDEITGKWLGSRQIRCNW 214
>AT1G54080.2 | Symbols: UBP1A | oligouridylate-binding protein 1A |
chr1:20183923-20186824 REVERSE LENGTH=430
Length = 430
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 188 NLYVGNLSPKVDENFLLRTFGRFGPIAS----VKIMWPRTEEERRRQRNCGFVAFMNRAD 243
N++VG+LSP+V + L +F F +S ++MW +++ R R GFV+F N+ D
Sbjct: 149 NIFVGDLSPEVTDAALFDSFSAFNSCSSYYRDARVMW---DQKTGRSRGFGFVSFRNQQD 205
Query: 244 GQAAKDEMQGVVVYEYELKIGWG 266
Q A +EM G V +++ W
Sbjct: 206 AQTAINEMNGKWVSSRQIRCNWA 228
>AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432682-17434805 FORWARD LENGTH=434
Length = 434
Score = 55.8 bits (133), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 169 FDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERR 228
+ PSG S +GD T ++VG L V + L + F FG I SVKI
Sbjct: 290 YMPSGAFTRS--EGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---------P 338
Query: 229 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
+ CGFV F+NR + + A +++ G V+ + +++ WG++
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 378
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 11/100 (11%)
Query: 169 FDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERR 228
+ P+G L + +GD T ++VG L V + L + F FG I SVKI
Sbjct: 288 YMPNGTL--TRPEGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---------P 336
Query: 229 RQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
+ CGFV F+NR + + A +++ G V+ + +++ WG++
Sbjct: 337 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRN 376
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 177 GSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 236
GS DG+ ++VG + P V + L + F +FG + SVKI + CGFV
Sbjct: 311 GSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---------PVGKGCGFV 361
Query: 237 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
F +R + A + + G V+ + +++ WG+S
Sbjct: 362 QFADRKSAEDAIESLNGTVIGKNTVRLSWGRS 393
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 177 GSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFV 236
G+ + DP T ++VG + V E+ L FG+FG + VKI + CGFV
Sbjct: 268 GNSGESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---------PAGKRCGFV 318
Query: 237 AFMNRADGQAAKDEMQGVVVYEYELKIGWGKS 268
+ NRA + A + G + +++ WG+S
Sbjct: 319 QYANRACAEQALSVLNGTQLGGQSIRLSWGRS 350
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 181 DGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMN 240
D DP T ++VG L V ++ L FG+FG + VKI + CGFV + N
Sbjct: 254 DNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVKI---------PPGKRCGFVQYAN 304
Query: 241 RADGQAAKDEMQGVVVYEYELKIGWGKS 268
+A + A + G + +++ WG+S
Sbjct: 305 KASAEHALSVLNGTQLGGQSIRLSWGRS 332
>AT1G13690.1 | Symbols: ATE1 | ATPase E1 | chr1:4693380-4694179
FORWARD LENGTH=177
Length = 177
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 189 LYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAK 248
LYVG L+ +V+E+ L F FG I VK ++ ++ R+ GFV F+ R D AA
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKT---PLDQANQKHRSFGFVTFLEREDASAAM 71
Query: 249 DEMQGVVVYEYELKIGWG 266
D M G +Y L + +
Sbjct: 72 DNMDGAELYGRVLTVNYA 89