Miyakogusa Predicted Gene

Lj4g3v1073400.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1073400.1 Non Chatacterized Hit- tr|D8UBN9|D8UBN9_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,41.55,3e-19,seg,NULL; PH domain-like,NULL,CUFF.48359.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G11680.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   307   3e-84

>AT5G11680.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cytosol, plasma membrane; EXPRESSED IN: 26 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: WW-domain-binding protein
           (InterPro:IPR018826); Has 1807 Blast hits to 1807
           proteins in 277 species: Archae - 0; Bacteria - 0;
           Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0;
           Other Eukaryotes - 339 (source: NCBI BLink). |
           chr5:3759463-3760634 FORWARD LENGTH=207
          Length = 207

 Score =  307 bits (787), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 148/203 (72%), Positives = 162/203 (79%), Gaps = 5/203 (2%)

Query: 1   MALNPQLFPNGMPVPFVNEMFVLARDGVEFEIDKIPGSGNHGGHLKTKGTIYLSNIRMVF 60
           MALNPQL PNGMPVPFVNEMFVL RDGVEFE+DKIPG   HGGH+K KG IYLSNIRMVF
Sbjct: 1   MALNPQLLPNGMPVPFVNEMFVLVRDGVEFEVDKIPGG--HGGHVKAKGVIYLSNIRMVF 58

Query: 61  VAKSPAGGLTAFDMPLLYTSGEKFNQPIFHCNNLSGHVEPVVPDDQHRALYSTHTFKILF 120
           V+  P     AFDMPLLY   EKFNQPIFHCNN++G VEPVVP+++HRALYSTH+FKILF
Sbjct: 59  VSSKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILF 118

Query: 121 KEGGCGTFIPLFFNLIASVXXXXXXXXXXXXXXXX---VDPLQAAQTPVDEMMRHAYVDP 177
           KEGGCGTF+PLF NLI+SV                   VDPLQAAQTPVDEMMRHAYVDP
Sbjct: 119 KEGGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDP 178

Query: 178 NDPTRIFLQQPNADSQLRRRTYQ 200
           NDPTRI+LQQP+ +SQLRRR Y 
Sbjct: 179 NDPTRIYLQQPSGESQLRRRAYH 201