Miyakogusa Predicted Gene

Lj4g3v1072330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1072330.1 Non Chatacterized Hit- tr|F6I4W9|F6I4W9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,38.1,3e-19,coiled-coil,NULL,gene.g53764.t1.1
         (166 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G26455.1 | Symbols: WIP1 | WPP domain interacting protein 1 |...    57   4e-09
AT5G56210.1 | Symbols: WIP2 | WPP domain interacting protein 2 |...    48   3e-06

>AT4G26455.1 | Symbols: WIP1 | WPP domain interacting protein 1 |
           chr4:13365737-13367384 FORWARD LENGTH=489
          Length = 489

 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 22/167 (13%)

Query: 1   MLAIKDSRIAELEISLTGEKFDKEESTCPTGFLDKNFNNVESELETLFRQKVEAEIEYLT 60
           ML +K+S I +LE +    K               ++   E  +E +FRQK+EAEIEYL 
Sbjct: 344 MLEVKESHIRDLESTTNQSKH--------------SWGGTEIVVEDIFRQKIEAEIEYLI 389

Query: 61  ITKTMQNLKAASACMLMEKQETVSGNKV-QVPNNLEEAHSVGSRLKTRADEVDKYCGGIL 119
            ++++ NL   S   L+++QE+++  +  +  N L    +  +    RA ++   C    
Sbjct: 390 YSRSIDNLN--SQMKLIDEQESLAEEQTHETLNKLGRVQTKAANFTNRAQDLQNDC---- 443

Query: 120 QVEESFTIQRRVCKLTFFLFFQFMCLILAILLVKCPFSSDYGVIIPT 166
            +E + TI++R CK+T ++  Q + L   +LL+      +   ++PT
Sbjct: 444 -IEITGTIKKRACKITSYVLIQLVLLSTVVLLLLSQLLPEPDTVVPT 489


>AT5G56210.1 | Symbols: WIP2 | WPP domain interacting protein 2 |
           chr5:22750660-22752363 REVERSE LENGTH=509
          Length = 509

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 74/135 (54%), Gaps = 22/135 (16%)

Query: 1   MLAIKDSRIAELEISLTGEKFDKEESTCPTGFLDKNFNNVESELETLFRQKVEAEIEYLT 60
           +L +K+++I ELE ++   +      TC  G         E  +E +F+QKVEAEIEY+ 
Sbjct: 370 ILEVKETQIRELESTINVSE------TCNGG--------TEIGIEDIFQQKVEAEIEYII 415

Query: 61  ITKTMQNLKAASACMLMEKQETVSGNKVQVPNNLEEAHSVGSRLKTRADEVDKYCGGILQ 120
            ++++ NLK      L+E+++T+  +K      L++A +    LK +A ++  +C  I +
Sbjct: 416 FSRSVGNLKR--RIKLIEEEKTLGLSK------LDKAETKAENLKNQAQDLQNHCVEITE 467

Query: 121 VEESFTIQRRVCKLT 135
           ++E   +++R  K T
Sbjct: 468 IQEVECLKKRAFKTT 482