Miyakogusa Predicted Gene
- Lj4g3v1062150.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1062150.1 tr|I1N651|I1N651_SOYBN Structural maintenance of
chromosomes protein OS=Glycine max GN=Gma.41604 PE=,84.99,0,STRUCTURAL
MAINTENANCE OF CHROMOSOMES SMC4,NULL; STRUCTURAL MAINTENANCE OF
CHROMOSOMES SMC FAMILY ME,CUFF.48332.1
(633 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromoso... 877 0.0
AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structura... 871 0.0
AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromoso... 140 3e-33
AT3G54670.2 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 140 3e-33
AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenan... 132 6e-31
AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural... 74 4e-13
AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 72 9e-13
AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of ch... 72 9e-13
AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromo... 71 2e-12
>AT5G48600.2 | Symbols: SMC3 | structural maintenance of chromosome 3
| chr5:19701908-19709091 FORWARD LENGTH=1244
Length = 1244
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/632 (69%), Positives = 504/632 (79%)
Query: 1 MILEKQVHLLPMLEKNVSTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRI 60
MILEKQ + L++ V TPE VPRLFDLV+V+DERMKLAF+AAL NTVVAKDLDQATRI
Sbjct: 611 MILEKQTDHIHKLKEKVKTPEDVPRLFDLVRVKDERMKLAFYAALGNTVVAKDLDQATRI 670
Query: 61 AYGGNYEFRRVVTLDGALFEKSXXXXXXXXXXXXXXXXXSIRAASVSVEAVTNAERQLSE 120
AYGGN EFRRVV LDGALFEKS SIRA VS EAV NAE +LS+
Sbjct: 671 AYGGNREFRRVVALDGALFEKSGTMSGGGGKARGGRMGTSIRATGVSGEAVANAENELSK 730
Query: 121 MADKLNAIRQRIMDAVRRYQASEKTVTALEMELAKCQKEVDSLNSQHSYIEKQLDSLKAA 180
+ D LN IR+++ +AVR+Y+A+E V+ LEMELAK Q+E++SLNS+H+Y+EKQL SL+AA
Sbjct: 731 IVDMLNNIREKVGNAVRQYRAAENEVSGLEMELAKSQREIESLNSEHNYLEKQLASLEAA 790
Query: 181 SQPSEDELVRLKGLTEIITAEEREIKTLTDGSKQLKEKASDLQRNIENAGGEXXXXXXXX 240
SQP DE+ RLK L +II+ EE+EI+ L GSKQLK+KA +LQ NIENAGGE
Sbjct: 791 SQPKTDEIDRLKELKKIISKEEKEIENLEKGSKQLKDKALELQTNIENAGGEKLKGQKAK 850
Query: 241 XXXXXXDIDKNHSEVNRLKVLIETGQKMMKKLTKGIXXXXXXXXXXXXXXXXXXXXXXXX 300
DIDKN++E+NR V IET QK++KKLTKGI
Sbjct: 851 VEKIQTDIDKNNTEINRCNVQIETNQKLIKKLTKGIEEATREKERLEGEKENLHVTFKDI 910
Query: 301 XXXAFIVQENYKKTQEMIDKHRDVLEEAKSEHDKMKKVVEELRASEVDADFKLKDMKKAY 360
AF +QE YKKTQ++ID+H+DVL AKS+++ +KK V+EL+AS VDA+FK++DMKK Y
Sbjct: 911 TQKAFEIQETYKKTQQLIDEHKDVLTGAKSDYENLKKSVDELKASRVDAEFKVQDMKKKY 970
Query: 361 KELEMKGKGYKKRLDELQTAICKHLEQIQVDLLDVEKLKATLDDEHLHAACDLKRACEMV 420
ELEM+ KGYKK+L++LQ A KH+EQIQ DL+D +KL+ATL D +L+ ACDLKRA EMV
Sbjct: 971 NELEMREKGYKKKLNDLQIAFTKHMEQIQKDLVDPDKLQATLMDNNLNEACDLKRALEMV 1030
Query: 421 TLLEAQLKEMNPNLDSISEYRKKVALYNERVEELNTVTQERDDIKKQYDEWRKKRLDEFM 480
LLEAQLKE+NPNLDSI+EYR KV LYN RV+ELN+VTQERDD +KQYDE RK+RLDEFM
Sbjct: 1031 ALLEAQLKELNPNLDSIAEYRSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFM 1090
Query: 481 EGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK 540
GFN ISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK
Sbjct: 1091 AGFNTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK 1150
Query: 541 TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF 600
TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF
Sbjct: 1151 TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF 1210
Query: 601 ELADRLVGIYKTDNCTKSITIDPRSFVVCQKA 632
ELADRLVGIYKTDNCTKSITI+P SF VCQK
Sbjct: 1211 ELADRLVGIYKTDNCTKSITINPGSFAVCQKT 1242
>AT5G48600.1 | Symbols: ATSMC3, ATCAP-C, ATSMC4, SMC3 | structural
maintenance of chromosome 3 | chr5:19701908-19709091
FORWARD LENGTH=1241
Length = 1241
Score = 871 bits (2250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/632 (68%), Positives = 502/632 (79%), Gaps = 3/632 (0%)
Query: 1 MILEKQVHLLPMLEKNVSTPEGVPRLFDLVKVQDERMKLAFFAALRNTVVAKDLDQATRI 60
MILEKQ + L++ V TPE VPRLFDLV+V+DERMKLAF+AAL NTVVAKDLDQATRI
Sbjct: 611 MILEKQTDHIHKLKEKVKTPEDVPRLFDLVRVKDERMKLAFYAALGNTVVAKDLDQATRI 670
Query: 61 AYGGNYEFRRVVTLDGALFEKSXXXXXXXXXXXXXXXXXSIRAASVSVEAVTNAERQLSE 120
AYGGN EFRRVV LDGALFEKS SIRA VS EAV NAE +LS+
Sbjct: 671 AYGGNREFRRVVALDGALFEKSGTMSGGGGKARGGRMGTSIRATGVSGEAVANAENELSK 730
Query: 121 MADKLNAIRQRIMDAVRRYQASEKTVTALEMELAKCQKEVDSLNSQHSYIEKQLDSLKAA 180
+ D LN IR+++ +AVR+Y+A+E V+ LEMELAK Q+E++SLNS+H+Y+EKQL SL+AA
Sbjct: 731 IVDMLNNIREKVGNAVRQYRAAENEVSGLEMELAKSQREIESLNSEHNYLEKQLASLEAA 790
Query: 181 SQPSEDELVRLKGLTEIITAEEREIKTLTDGSKQLKEKASDLQRNIENAGGEXXXXXXXX 240
SQP DE+ RLK L +II+ EE+EI+ L GSKQLK+K LQ NIENAGGE
Sbjct: 791 SQPKTDEIDRLKELKKIISKEEKEIENLEKGSKQLKDK---LQTNIENAGGEKLKGQKAK 847
Query: 241 XXXXXXDIDKNHSEVNRLKVLIETGQKMMKKLTKGIXXXXXXXXXXXXXXXXXXXXXXXX 300
DIDKN++E+NR V IET QK++KKLTKGI
Sbjct: 848 VEKIQTDIDKNNTEINRCNVQIETNQKLIKKLTKGIEEATREKERLEGEKENLHVTFKDI 907
Query: 301 XXXAFIVQENYKKTQEMIDKHRDVLEEAKSEHDKMKKVVEELRASEVDADFKLKDMKKAY 360
AF +QE YKKTQ++ID+H+DVL AKS+++ +KK V+EL+AS VDA+FK++DMKK Y
Sbjct: 908 TQKAFEIQETYKKTQQLIDEHKDVLTGAKSDYENLKKSVDELKASRVDAEFKVQDMKKKY 967
Query: 361 KELEMKGKGYKKRLDELQTAICKHLEQIQVDLLDVEKLKATLDDEHLHAACDLKRACEMV 420
ELEM+ KGYKK+L++LQ A KH+EQIQ DL+D +KL+ATL D +L+ ACDLKRA EMV
Sbjct: 968 NELEMREKGYKKKLNDLQIAFTKHMEQIQKDLVDPDKLQATLMDNNLNEACDLKRALEMV 1027
Query: 421 TLLEAQLKEMNPNLDSISEYRKKVALYNERVEELNTVTQERDDIKKQYDEWRKKRLDEFM 480
LLEAQLKE+NPNLDSI+EYR KV LYN RV+ELN+VTQERDD +KQYDE RK+RLDEFM
Sbjct: 1028 ALLEAQLKELNPNLDSIAEYRSKVELYNGRVDELNSVTQERDDTRKQYDELRKRRLDEFM 1087
Query: 481 EGFNAISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK 540
GFN ISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK
Sbjct: 1088 AGFNTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEK 1147
Query: 541 TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF 600
TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF
Sbjct: 1148 TLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMF 1207
Query: 601 ELADRLVGIYKTDNCTKSITIDPRSFVVCQKA 632
ELADRLVGIYKTDNCTKSITI+P SF VCQK
Sbjct: 1208 ELADRLVGIYKTDNCTKSITINPGSFAVCQKT 1239
>AT3G54670.3 | Symbols: TTN8 | Structural maintenance of chromosomes
(SMC) family protein | chr3:20235818-20243701 FORWARD
LENGTH=1239
Length = 1239
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 134/223 (60%), Gaps = 21/223 (9%)
Query: 425 AQLKEMNPNLDSISEYRKKVALYNERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFN 484
++++ PNL ++ +Y + +E +E + ++ ++KR + FME FN
Sbjct: 1014 SEIERTAPNLRALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFN 1073
Query: 485 AISLKLKEMYQMIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGG 538
I+ + ++Y+ +T LGG A L L + DPF G+ ++ PP K ++++ LSGG
Sbjct: 1074 HIASNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGG 1133
Query: 539 EKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-------KDA--- 588
EKT+++LAL+F++H Y+P+P +++DE+DAALD NV+ V +++ ++ +DA
Sbjct: 1134 EKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDG 1193
Query: 589 ---QFIIISLRNNMFELADRLVGIYKTD--NCTKSITIDPRSF 626
Q I+ISL+++ ++ A+ LVG+Y+ +C+ +++ D R++
Sbjct: 1194 NGFQSIVISLKDSFYDKAEALVGVYRDTERSCSSTMSFDLRNY 1236
>AT3G54670.2 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance
of chromosomes (SMC) family protein |
chr3:20240428-20243701 FORWARD LENGTH=453
Length = 453
Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 132/223 (59%), Gaps = 21/223 (9%)
Query: 425 AQLKEMNPNLDSISEYRKKVALYNERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFN 484
++++ PNL ++ +Y + +E +E + ++ ++KR + FME FN
Sbjct: 228 SEIERTAPNLRALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFN 287
Query: 485 AISLKLKEMYQMIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGG 538
I+ + ++Y+ +T LGG A L L + DPF G+ ++ PP K ++++ LSGG
Sbjct: 288 HIASNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGG 347
Query: 539 EKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKDA---------- 588
EKT+++LAL+F++H Y+P+P +++DE+DAALD NV+ V +++ ++ A
Sbjct: 348 EKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDG 407
Query: 589 ---QFIIISLRNNMFELADRLVGIYKTD--NCTKSITIDPRSF 626
Q I+ISL+++ ++ A+ LVG+Y+ +C+ +++ D R++
Sbjct: 408 NGFQSIVISLKDSFYDKAEALVGVYRDTERSCSSTMSFDLRNY 450
>AT3G54670.1 | Symbols: TTN8, SMC1, ATSMC1 | Structural maintenance of
chromosomes (SMC) family protein | chr3:20235818-20243701
FORWARD LENGTH=1238
Length = 1238
Score = 132 bits (333), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 133/223 (59%), Gaps = 23/223 (10%)
Query: 425 AQLKEMNPNLDSISEYRKKVALYNERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFN 484
++++ PNL ++ +Y + +E +E + ++ ++KR + FME FN
Sbjct: 1015 SEIERTAPNLRALDQYEAIQEKEKQVSQEFEAARKEEKQVADAFNTVKQKRYELFMEAFN 1074
Query: 485 AISLKLKEMYQMIT------LGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGG 538
I+ + ++Y+ +T LGG A L L + DPF G+ ++ PP K ++++ LSGG
Sbjct: 1075 HIASNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGIKYTTMPPTKRFRDMEQLSGG 1134
Query: 539 EKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRT-------KDA--- 588
EKT+++LAL+F++H +P+P +++DE+DAALD NV+ V +++ ++ +DA
Sbjct: 1135 EKTVAALALLFSIH--RPSPFFILDEVDAALDNLNVAKVAKFIRSKSCQAARDNQDAEDG 1192
Query: 589 ---QFIIISLRNNMFELADRLVGIYKTD--NCTKSITIDPRSF 626
Q I+ISL+++ ++ A+ LVG+Y+ +C+ +++ D R++
Sbjct: 1193 NGFQSIVISLKDSFYDKAEALVGVYRDTERSCSSTMSFDLRNY 1235
>AT5G62410.1 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural
maintenance of chromosomes 2 | chr5:25056308-25062436
FORWARD LENGTH=1175
Length = 1175
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 447 YNERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELE 506
YN + + NT+ ++ I K +E +K+ + + ++ ++ + G A+LE
Sbjct: 996 YNALISKKNTIENDKSKITKVIEELDEKKKETLKVTWVKVNQDFGSIFSTLLPGTMAKLE 1055
Query: 507 LVDS---LDPFSEGVVFSVRPPKKSWK-NIANLSGGEKTLSSLALVFALHHYKPTPLYVM 562
+ LD V F K WK +++ LSGG+++L +L+L+ AL +KP PLY++
Sbjct: 1056 PPEDGNFLDGLEVRVAFG-----KVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYIL 1110
Query: 563 DEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRL 606
DE+DAALD + +G ++ +QFI++SL+ MF A+ L
Sbjct: 1111 DEVDAALDLSHTQNIGRMIRAHFPHSQFIVVSLKEGMFNNANVL 1154
>AT2G27170.2 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein | chr2:11609319-11617064
REVERSE LENGTH=1204
Length = 1204
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 535 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKD--AQFII 592
LSGG+KT+ +LAL+FA+ P P Y+ DEIDAALD + + VG+ ++ D QFI
Sbjct: 1099 LSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRLADDYGTQFIT 1158
Query: 593 ISLRNNMFELADRLVGIY 610
+ R + +AD++ G++
Sbjct: 1159 TTFRPELVRVADKIYGVF 1176
>AT2G27170.1 | Symbols: TTN7, SMC3 | Structural maintenance of
chromosomes (SMC) family protein | chr2:11609319-11617064
REVERSE LENGTH=1204
Length = 1204
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 535 LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKD--AQFII 592
LSGG+KT+ +LAL+FA+ P P Y+ DEIDAALD + + VG+ ++ D QFI
Sbjct: 1099 LSGGQKTVVALALIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNLIRRLADDYGTQFIT 1158
Query: 593 ISLRNNMFELADRLVGIY 610
+ R + +AD++ G++
Sbjct: 1159 TTFRPELVRVADKIYGVF 1176
>AT3G47460.1 | Symbols: ATSMC2 | Structural maintenance of chromosomes
(SMC) family protein | chr3:17486765-17493178 FORWARD
LENGTH=1171
Length = 1171
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 447 YNERVEELNTVTQERDDIKKQYDEWRKKRLDEFMEGFNAISLKLKEMYQMITLGGDAELE 506
YN + + N + ++ IKK +E +K+ + + ++ ++ + G ++LE
Sbjct: 993 YNALMTKKNIIETDKSKIKKVIEELDEKKKETLKVTWVKVNQDFGSIFSTLLPGTMSKLE 1052
Query: 507 LVDS---LDPFSEGVVFSVRPPKKSWK-NIANLSGGEKTLSSLALVFALHHYKPTPLYVM 562
+ LD V F WK +++ LSGG+++L +L+L+ AL +KP P+Y++
Sbjct: 1053 PPEGGTFLDGLEVRVAFG-----DVWKQSLSELSGGQRSLLALSLILALLLFKPAPIYIL 1107
Query: 563 DEIDAALDFKNVSIVGHYVKDRTKDAQFIIISLRNNMFELADRL 606
DE+DAALD + +G +K +QFI++SL+ MF AD L
Sbjct: 1108 DEVDAALDLSHTQNIGRMIKSHFPHSQFIVVSLKEGMFSNADVL 1151