Miyakogusa Predicted Gene

Lj4g3v1062130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1062130.1 Non Chatacterized Hit- tr|I1L4N8|I1L4N8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.38496
PE,74.56,0,TRANSCRIPTION INITIATION FACTOR IA (RRN3),RNA polymerase I
specific transcription initiation factor ,CUFF.48341.1
         (556 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G34750.1 | Symbols:  | RNA polymerase I specific transcriptio...   537   e-153
AT1G30590.1 | Symbols:  | RNA polymerase I specific transcriptio...   496   e-140
AT2G39240.1 | Symbols:  | RNA polymerase I specific transcriptio...   406   e-113

>AT2G34750.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 protein | chr2:14660449-14663792
           REVERSE LENGTH=613
          Length = 613

 Score =  537 bits (1384), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 283/539 (52%), Positives = 377/539 (69%), Gaps = 14/539 (2%)

Query: 16  MENPQLSDLQLVYHVRDALVAVTLGERENYDDLVGCLFRPLNWTLKKKHLNEDEIALVVT 75
           ++N  LSD QLV  VR AL +V  G+ + Y ++VG + R +     K+  + D +A + T
Sbjct: 20  VDNVDLSDTQLVQTVRKALTSVKTGDSDLYSEMVGVMARDI-----KEFKDPDVVAQLET 74

Query: 76  TLNALAGAVSYIDFSHHNALLSAVSSMSLWDYGTNVMDALTELIVSLASTNVKYMDLCLE 135
            L AL+GAV+ ID  HH  LLSA+  M LWD+  +VMDAL  L++SLA T+ KY+D CL 
Sbjct: 75  VLKALSGAVACIDVLHHQKLLSALFRMKLWDHRPDVMDALVNLVISLAVTSGKYLDSCLN 134

Query: 136 MLVENFIPPN-MKYFLSLRNGLDRKNKVLARVHTALEQIAELVPLAPLRLSKIVLQKMPN 194
           MLV NF+PP  +   LS    L++K  VL+RVH AL +I+ LVPL P RL  ++ Q+MP 
Sbjct: 135 MLVSNFVPPPWVVNNLSHSRILNKKIDVLSRVHAALLKISILVPLTPSRLVPMLFQQMPK 194

Query: 195 VFSGEHMIVMYVENMLRLESGSIGETFGGAMLPALVDRLIQLDVEIGWDGIMQEDA-KGI 253
           +   +H IV+YVE++L+LE+ SIG+  G  +L  +++RL  LD+EI WD I Q+D+ +G+
Sbjct: 195 MHKKDHSIVIYVESLLKLENSSIGQVGGSMILGMVMERLRDLDLEIEWDDIPQDDSSRGM 254

Query: 254 FEMELENAAEFADENEKCDDMSSAELLKRKNLQGNLVVEKLDSLMELTFLHLETCQNNGR 313
           F+MELE+AAE    +    D      LK+    G++V + LD LM + F HLE+CQN+GR
Sbjct: 255 FDMELEDAAEGTMND---GDELPVGPLKQDTSDGSIVSKLLDKLMVVAFEHLESCQNDGR 311

Query: 314 LAQVFNILLTSFKRTVLNAYKSKFTQFVMFYACALDPEGCGVKFAMFLAEMFGSDVNPPI 373
           L QVF  L  SF+  +LN YKSKFTQF++FYAC+LDPE CGVKFA  L E+F S      
Sbjct: 312 LDQVFESLFKSFENFILNTYKSKFTQFLIFYACSLDPENCGVKFASKLVEIFLSSNKHVA 371

Query: 374 NRMSAVAYLASYLSRAKFLSAALVASILQRLVDWCFNYCKLHDFDMNPQAHQVFYSGCQA 433
            RMSAVAYLAS+L+R KFL  + VAS+L+RL+D C  YC+  + D  P+AHQ+F+SGCQA
Sbjct: 372 TRMSAVAYLASFLARGKFLPVSFVASMLKRLIDECVGYCRTCNDDTRPEAHQIFFSGCQA 431

Query: 434 IMYVLCFRMRSLVDIPRLKLQLHNMPMEPIWKHKLSPLKVCLPTVVEEFLRQAKAAQLFM 493
           IMYVLCFRMRS++D+PR + QL   P+E I  HKL+PL VCLP+VV EFLRQAK   LF+
Sbjct: 432 IMYVLCFRMRSILDVPRFRSQL--TPLESILMHKLNPLMVCLPSVVAEFLRQAKEGGLFI 489

Query: 494 SSSETFVFNDLLESDDLSRSFGGMDRLDMFFPFDPCLLKKSESYIRPHFVRWSRVKTTY 552
             S++F+F+DLLES +LSR+FGG +RLD FFPFDPCLLK S S+I P+F+ WS VK TY
Sbjct: 490 -VSDSFIFDDLLES-ELSRAFGGFERLDTFFPFDPCLLKSSNSFISPNFIYWSMVKATY 546


>AT1G30590.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 protein | chr1:10835976-10839524
           REVERSE LENGTH=604
          Length = 604

 Score =  496 bits (1278), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 277/556 (49%), Positives = 368/556 (66%), Gaps = 33/556 (5%)

Query: 10  EEYPT------PMENPQLSDLQLVYHVRDALVAVTLGERENYDDL--VGCLFRPLNWTLK 61
           EE+P+       M+N + +D  LV+ VR AL +V  G+ ++Y  L  V CL    ++   
Sbjct: 4   EEFPSVPFNSNAMDNAEYTDTDLVFAVRKALASVQNGDTDDYSQLKTVMCLTEDADF--- 60

Query: 62  KKHLNEDEIALVVTTLNALAGAVSYIDFSHHNALLSAVSSMSLW--DYGTNVMDALTELI 119
                 D +A + T L +L+ +V++ID  HH  LL A   MSLW   +  +VMDAL +LI
Sbjct: 61  ------DAVAQLETVLKSLSVSVAWIDLVHHKDLLEA---MSLWYHSHRPSVMDALVDLI 111

Query: 120 VSLASTNVKYMDLCLEMLVENFIPPNMKYFLSLRNGLDRKNKVLARVHTALEQIAELVPL 179
           +SLA+T+ KY+D CL MLV NF  P  K+ +S    + +  +V  RVH AL +I+ L+PL
Sbjct: 112 ISLAATSGKYLDPCLNMLVRNFSQPTFKHKVSQTQLVKKMQEVHPRVHAALHKISYLIPL 171

Query: 180 APLRLSKIVLQKMPNVFSGEHMIVMYVENMLRLESGSIGETFGGAMLPALVDRLIQLDVE 239
           AP  L  I+ Q M  +   +  IV YV+N+LRLE+ SIGE  G  +L  +++R++ LD+ 
Sbjct: 172 APWNLVSILAQNMRKIDKKDPSIVTYVDNLLRLENSSIGEVVGSVILMMVMERMLDLDLV 231

Query: 240 IGWDGIMQEDAKGIFEMELENAAEFADENEKCDDMSSAELLKRKNLQGNLVVEKLDSLME 299
            G D    +   G+F+MELE+A E +  NE   D      LK+    GN+V E LD LM 
Sbjct: 232 SGCD----DSNGGMFDMELEDAVE-STMNEG--DEFPVGALKQNTSGGNVVSELLDKLMV 284

Query: 300 LTFLHLETCQNNGRLAQVFNILLTSFKRTVLNAYKSKFTQFVMFYACALDPEGCGVKFAM 359
           L F HLE+CQN+ RL +VF IL  SF+  +LN YK+KF+QF+MFYAC+LDPE CGV+FA 
Sbjct: 285 LFFHHLESCQNSDRLDEVFEILFKSFENYILNTYKTKFSQFLMFYACSLDPENCGVRFAS 344

Query: 360 FLAEMFGSDVNPPINRMSAVAYLASYLSRAKFLSAALVASILQRLVDWCFNYCKLHDFDM 419
            L +++ S     + RMSAVAYLASYLSR KFL A+ VAS+L+RLVD C  YC   + D+
Sbjct: 345 KLLDIYLSSNTCRLTRMSAVAYLASYLSRGKFLPASFVASMLKRLVDECAEYCGTCNDDV 404

Query: 420 NPQAHQVFYSGCQAIMYVLCFRMRSLVDIPRLKLQLHNMPMEPIWKHKLSPLKVCLPTVV 479
            P+AHQVFYSGCQAI+YVLCFRMRS+V+IPR + Q  +  +E I  HKL+PL VCLP+VV
Sbjct: 405 KPEAHQVFYSGCQAILYVLCFRMRSIVEIPRFQSQFRS--LESILSHKLNPLLVCLPSVV 462

Query: 480 EEFLRQAKAAQLFMSSSETFVFNDLLESDDLSRSFGGMDRLDMFFPFDPCLLKKSESYIR 539
            EFL+QAKA  LF+  SE+F+F+DL ES +LSR+FGG +RLD FFPFDPCLLK S SYI 
Sbjct: 463 SEFLKQAKAGGLFI-VSESFIFDDLHES-ELSRAFGGFERLDTFFPFDPCLLKMSSSYIS 520

Query: 540 PHFVRWSRVKTTYDSD 555
           P+F  WS VKTTY  D
Sbjct: 521 PNFNFWSMVKTTYGED 536


>AT2G39240.1 | Symbols:  | RNA polymerase I specific transcription
           initiation factor RRN3 protein | chr2:16384786-16387827
           REVERSE LENGTH=573
          Length = 573

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 247/555 (44%), Positives = 337/555 (60%), Gaps = 65/555 (11%)

Query: 16  MENPQLSDLQLVYHVRDALVAVTLGERENYDDLVGCLFRPLNWTLKKKHLNEDEIAL--- 72
           +E   LSD  LV  +R+ L +   G+ + Y++LV  ++      +KKK   +D +A    
Sbjct: 6   VETADLSDKALVSAIREVLASAQSGDTDQYNELVQLMY------IKKKKSGDDAMAQPEV 59

Query: 73  -----VV----TTLNALAGAVSYIDFSHHNALLSAVSSMSLWDYGTNVMDALTELIVSLA 123
                VV    T L  L+ +V+ +D  HHN LL  +    +WD+  NV+ AL +LI+SLA
Sbjct: 60  PDDVDVVAQRETLLKILSHSVACLDDVHHNHLLQLILGTRIWDHKPNVIYALLDLIISLA 119

Query: 124 STNVKYMDLCLEMLVENFIPPNMKYFLSLRNGLDRKN-KVLARVHTALEQIAELVPLAPL 182
           +T+ K++  CL+ LV N      K        LD K  +VL+RVH AL +I+ LVPLAP 
Sbjct: 120 TTSGKHLSSCLDTLVSNLRSQPRK--------LDNKMLEVLSRVHAALHKISYLVPLAPS 171

Query: 183 RLSKIVLQKMPNVFSGEHM--IVMYVENMLRLESGSI-GETFGGAMLPALVDRLIQLDVE 239
            L  I+ Q MP+V     +  +V YV+N+L+LE+ SI G+  G  +L  ++ R   LD E
Sbjct: 172 ILLPILAQSMPSVHDKARLQVVVPYVKNLLKLENSSIIGKVVGKDILMMVMGRFRDLDSE 231

Query: 240 IGWDGIMQEDAK-GIFEMELENAAEFADENEKCDDMSSAELLKRKNLQGNLVVEKLDSLM 298
           I  D  +Q D+   +F+MEL+ A E                       G LV + LD LM
Sbjct: 232 IECDDNLQNDSSLAMFDMELDVAVE-----------------------GTLVSKLLDDLM 268

Query: 299 ELTFLHLETCQNNGRLAQVFNILLTSFKRTVLNAYKSKFTQFVMFYACALDPEGCGVKFA 358
             +F HL++CQ+ GRL +VF  L  SF+  +LN  K KF+QF+MFYAC+LDPE CGVKFA
Sbjct: 269 VESFNHLKSCQDAGRLDEVFENLFESFENLILNTQKLKFSQFLMFYACSLDPENCGVKFA 328

Query: 359 MFLAEMFGSDVNPPINRMSAVAYLASYLSRAKFLSAALVASILQRLVDWCFNYCKLHDFD 418
             L E F S  N  + R +AV YLASYL+RA FLSA+ VAS+L+RLVD C +YC+  + D
Sbjct: 329 SKLLEKFLSSNNNQVTRTNAVTYLASYLARANFLSASFVASMLKRLVDECADYCRTCNDD 388

Query: 419 MNPQAHQVFYSGCQAIMYVLCFRMRSLVDIPRLKLQLHNMPMEPIWKHKLSPLKVCLPTV 478
             P+ HQVFYSGCQAI+YVLCFRMRS++++P  + QL   P+E +  HKL PL+VCL +V
Sbjct: 389 ARPEVHQVFYSGCQAILYVLCFRMRSILEVPHFQSQL--TPLESVLSHKLDPLRVCLSSV 446

Query: 479 VEEFLRQAKAAQLFMSSSETFVFNDLLESDDLSRSFGGMDRLDMFFPFDPCLLKKSESYI 538
           V EFL QAKA  LF+  S+ F+F+DL ES +LSR+ GG      FFPF P LL+KS S I
Sbjct: 447 VSEFLIQAKACGLFI-VSDAFIFDDLSES-ELSRALGG------FFPF-PWLLEKSNSLI 497

Query: 539 RPHFVRWSRVKTTYD 553
            PHF++ S VK TY+
Sbjct: 498 SPHFIKRSEVKKTYE 512