Miyakogusa Predicted Gene

Lj4g3v1037670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1037670.1 Non Chatacterized Hit- tr|B8BJ41|B8BJ41_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,47.13,0.0000000000001,Med4,Mediator complex, subunit Med4;
seg,NULL,CUFF.48379.1
         (401 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G02850.1 | Symbols:  | hydroxyproline-rich glycoprotein famil...   327   6e-90

>AT5G02850.1 | Symbols:  | hydroxyproline-rich glycoprotein family
           protein | chr5:652159-653439 FORWARD LENGTH=426
          Length = 426

 Score =  327 bits (839), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 187/324 (57%), Positives = 229/324 (70%), Gaps = 11/324 (3%)

Query: 60  RAQAILVQMASLTSKLFEVSSNRSVWVTAFRGSIPTFLSSQAQAHXXXXXXXXXXXXKEI 119
           RAQA+L QMA LTSKLF+VS NR++W++AFRGS+P+FLSS +               KEI
Sbjct: 85  RAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPSFLSSHSLPPPPPLENPSPSSTKEI 144

Query: 120 ISLFSTLQTQIVEAITELQEILDLQDAKQKIDREICSKDMALLGLANKLKDSERGLDILV 179
           +S F++LQTQ+ EA+TELQEILDLQDAKQK+ REI SKD +LL  ANKLKD+ER LD+LV
Sbjct: 145 LSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIKSKDSSLLAFANKLKDAERVLDMLV 204

Query: 180 DYYSDYRRSKRTKLGDGSEDDSLTSSTVSS----QLKLSDILSYAHRISYTTFAPPEFGA 235
           D YSDYR+ KR+K+ +  ED+   SS+ S+    QLKL DIL+YAH+ISYTTFAPPEFGA
Sbjct: 205 DDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQLKLKDILAYAHKISYTTFAPPEFGA 264

Query: 236 GQAPLRGAMPPAPQDEQMRASQLYNFADLDIGLPKAVETKEKTIEAIVEPPPQQSVDTNP 295
           GQAPLRGA+PPAPQDEQMRASQLY FADLDIGLPK VE  EK +EA++EPPP        
Sbjct: 265 GQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKTVENMEKKVEALIEPPPPPEA---- 320

Query: 296 LANLSAIQGLLPPNFAVPPGWKPGMPVQLPMXXXXXXXXXXXXXXXXXXXXMDSLPVPRF 355
             ++SAI  LLPPN AVP GWKPGMPV+L                      ++S+  PR 
Sbjct: 321 -MDISAIHNLLPPNIAVPSGWKPGMPVEL-PRDLPLPPPGWKPGDPVVLPPLESIAAPRA 378

Query: 356 EE-QQLHPHIPQPKQPEVIQVQHV 378
           E+ Q + P     + P+VIQV+ V
Sbjct: 379 EDHQHMRPSQGLHRPPDVIQVRAV 402