Miyakogusa Predicted Gene

Lj4g3v1037650.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1037650.2 tr|G7LC44|G7LC44_MEDTR DNA-(Apurinic or
apyrimidinic site) lyase OS=Medicago truncatula
GN=MTR_8g075,78.44,0,DNase
I-like,Endonuclease/exonuclease/phosphatase; SUBFAMILY NOT NAMED,NULL;
AP ENDONUCLEASE,Exodeox,CUFF.48310.2
         (615 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36050.2 | Symbols:  | endonuclease/exonuclease/phosphatase f...   614   e-176
AT4G36050.1 | Symbols:  | endonuclease/exonuclease/phosphatase f...   373   e-103
AT2G41460.1 | Symbols: ARP | apurinic endonuclease-redox protein...    92   1e-18
AT2G41460.2 | Symbols: ARP | apurinic endonuclease-redox protein...    65   1e-10

>AT4G36050.2 | Symbols:  | endonuclease/exonuclease/phosphatase
           family protein | chr4:17052323-17055044 REVERSE
           LENGTH=610
          Length = 610

 Score =  614 bits (1584), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 329/615 (53%), Positives = 424/615 (68%), Gaps = 52/615 (8%)

Query: 1   MKIVTYNVNGLRQRIAQFGSLRNLLNSFDADIICFQETKLRRQDLTADLVMADGYESFFS 60
           MKIVTYNVNGLRQR++QF SL  LL+SFDADIICFQETKLRRQ+LTADL +ADGYESFFS
Sbjct: 1   MKIVTYNVNGLRQRVSQFDSLLKLLDSFDADIICFQETKLRRQELTADLAIADGYESFFS 60

Query: 61  CTRTSDKGRTGYSGVITFCRVKSAFSSNEVALPLAAEEGFTGLM-GDSQTCKANLPFSMD 119
           CTRTS+KGRTGYSGV TFCRVKSA SS E ALP+ AEEG TGL+  +S+  K+      +
Sbjct: 61  CTRTSEKGRTGYSGVATFCRVKSASSSCETALPVTAEEGITGLVNSNSRGGKSETSTVAE 120

Query: 120 DLEEFSKDELLSVDSEGRCIITDHSHFVLFNIYGPRAGGDDKERIQFKQNFYKILQKRWE 179
            LEE+ K+ELL +D EGRC+ITDH HFV+FN+YGPRA  DD +RI+FK  FY +L++RWE
Sbjct: 121 GLEEYEKEELLMIDQEGRCVITDHGHFVVFNVYGPRAVADDADRIEFKHRFYGVLERRWE 180

Query: 180 TLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRAKHP 239
            LL QGRR+FVVGDLNIAPFA+DRC+AGPDFE NEFR+WF+S+L+E  G FSDVFR+KHP
Sbjct: 181 CLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHP 240

Query: 240 NKTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILTEYK 299
            + +A+TCW+ ++GAE FN+GSRIDHIL AGSCLH+ +D + HSF+ CHV +CDILTEYK
Sbjct: 241 ERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYK 300

Query: 300 RCKPESTLSAHRWKGGRSIKLEGSDHAPVYMTLLEIPEVSLHSTPFLSARYVPMVHGIQQ 359
           R K E+  +  RWKGG   K +GSDH PV+++  ++P++  HSTP L++RY+PM++G QQ
Sbjct: 301 RFKNENMPT--RWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQ 358

Query: 360 TLVSMLVKRRVSEQTKSCEM------------VNEDISMGSTYESIEPTNQTDSSTSECH 407
           TLVS+  KRR +E+ K+ E+            +  DIS G       P     S      
Sbjct: 359 TLVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTG-------PLRNCGS------ 405

Query: 408 FPSSQDSVCSILESKELSRGSSQEAAISKSGS------GYEKSMPRKCNES----KKKAR 457
              S +  CS  E+K  S G ++   ++ +GS      G   S  R  N S    +KKAR
Sbjct: 406 MGISLEKSCS-FENKSTS-GVTEAETVAATGSIDNLSDGIRASSVRALNISRDGDRKKAR 463

Query: 458 NNQGSQLSLRSFFQKSTNLDNGVNNSCTDHSNNQAEPSQPDPHLRETSTAIDHSSSPKQC 517
             Q SQLSL+SFF  ++ ++N  ++S +  S++ +   +    + E + +    S P   
Sbjct: 464 KIQSSQLSLKSFFTTNSKVNNVEDSSSSYVSSSPSSQVE---SITEPNVSGKEDSEPTTS 520

Query: 518 EVNTDACDLDLAELNDSSRKEEKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVVKKQ 577
               D            S  ++K++ A +EWQRIQ +MQNSIPLCKGHKE C+ARVVKK 
Sbjct: 521 TQEQD---------QTGSSAKQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKP 571

Query: 578 GSNFGRRFYVCARAE 592
           G  FGRRFYVC+RAE
Sbjct: 572 GPTFGRRFYVCSRAE 586


>AT4G36050.1 | Symbols:  | endonuclease/exonuclease/phosphatase
           family protein | chr4:17052345-17054081 REVERSE
           LENGTH=408
          Length = 408

 Score =  373 bits (957), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 278/437 (63%), Gaps = 51/437 (11%)

Query: 201 IDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRAKHPNKTEAYTCWAQNTGAEVFNFG 260
           +DRC+AGPDFE NEFR+WF+S+L+E  G FSDVFR+KHP + +A+TCW+ ++GAE FN+G
Sbjct: 1   MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60

Query: 261 SRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILTEYKRCKPESTLSAHRWKGGRSIKL 320
           SRIDHIL AGSCLH+ +D + HSF+ CHV +CDILTEYKR K E+  +  RWKGG   K 
Sbjct: 61  SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPT--RWKGGLVTKF 118

Query: 321 EGSDHAPVYMTLLEIPEVSLHSTPFLSARYVPMVHGIQQTLVSMLVKRRVSEQTKSCEM- 379
           +GSDH PV+++  ++P++  HSTP L++RY+PM++G QQTLVS+  KRR +E+ K+ E+ 
Sbjct: 119 KGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVS 178

Query: 380 -----------VNEDISMG----------STYESIEPTNQTDSSTSECHFPSSQDSVCSI 418
                      +  DIS G          S  +S    N++ S  +E    ++  S+ ++
Sbjct: 179 CSSSTQSNTSSICGDISTGPLRNCGSMGISLEKSCSFENKSTSGVTEAETVAATGSIDNL 238

Query: 419 LESKELSRGSSQEAAISKSGSGYEKSMPRKCNESKKKARNNQGSQLSLRSFFQKSTNLDN 478
             S  +   S +   IS+ G              +KKAR  Q SQLSL+SFF  ++ ++N
Sbjct: 239 --SDGIRASSVRALNISRDG-------------DRKKARKIQSSQLSLKSFFTTNSKVNN 283

Query: 479 GVNNSCTDHSNNQAEPSQPDPHLRETSTAIDHSSSPKQCEVNTDACDLDLAELNDSSRKE 538
             ++S +  S++ +   +    + E + +    S P       D            S  +
Sbjct: 284 VEDSSSSYVSSSPSSQVE---SITEPNVSGKEDSEPTTSTQEQD---------QTGSSAK 331

Query: 539 EKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVVKKQGSNFGRRFYVCARAEGPASNP 598
           +K++ A +EWQRIQ +MQNSIPLCKGHKE C+ARVVKK G  FGRRFYVC+RAEGP+SNP
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPSSNP 391

Query: 599 EANCGYFKWATSKSRNK 615
           EANCGYFKWA+SK R+K
Sbjct: 392 EANCGYFKWASSKFRDK 408


>AT2G41460.1 | Symbols: ARP | apurinic endonuclease-redox protein |
           chr2:17285731-17288769 FORWARD LENGTH=536
          Length = 536

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 140/340 (41%), Gaps = 89/340 (26%)

Query: 1   MKIVTYNVNGLRQ--RIAQFGSLRNLLNSFDADIICFQETKLRRQDLT-ADLVMADGYE- 56
           +K++T+NVNGLR   +   F +L+ L    + DI+C QETKL+ +D+      + DGY+ 
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQ-LAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDH 334

Query: 57  SFFSCTRTSDKGRTGYSGVITFCRVKSAFSSNEVALPLAAEEGFTGLMGDSQTCKANLPF 116
           SF+SC+ +    + GYSG     R+K          PL+   G TGL G           
Sbjct: 335 SFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGLSGH---------- 369

Query: 117 SMDDLEEFSKDELLSVDSEGRCIITDHSHFVLFNIYGPRAGGDDKERIQFKQNFYKILQK 176
                           D+EGR +  +   F L N Y P + GD  +R+ ++   +     
Sbjct: 370 ----------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLSYRIEEWDRTLS 412

Query: 177 RWETLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEF----RRWFKSMLIENEGRFSD 232
                L + + + + GDLN A   ID  +   +  +  F    R+ F + L++    F D
Sbjct: 413 NHIKELEKSKPVVLTGDLNCAHEEIDIFNPAGNKRSAGFTIEERQSFGANLLDKG--FVD 470

Query: 233 VFRAKHPNKTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMDC 292
            FR +HP     YT W    G    N G R+D+ L + S             I  +V D 
Sbjct: 471 TFRKQHPGVV-GYTYWGYRHGGRKTNKGWRLDYFLVSQS-------------IAANVHDS 516

Query: 293 DILTEYKRCKPESTLSAHRWKGGRSIKLEGSDHAPVYMTL 332
            IL +                      + GSDH P+ + L
Sbjct: 517 YILPD----------------------INGSDHCPIGLIL 534


>AT2G41460.2 | Symbols: ARP | apurinic endonuclease-redox protein |
           chr2:17285731-17288041 FORWARD LENGTH=403
          Length = 403

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 79/171 (46%), Gaps = 47/171 (27%)

Query: 1   MKIVTYNVNGLRQ--RIAQFGSLRNLLNSFDADIICFQETKLRRQDLT-ADLVMADGYE- 56
           +K++T+NVNGLR   +   F +L+ L    + DI+C QETKL+ +D+      + DGY+ 
Sbjct: 276 VKVMTWNVNGLRGLLKFESFSALQ-LAQRENFDILCLQETKLQVKDVEEIKKTLIDGYDH 334

Query: 57  SFFSCTRTSDKGRTGYSGVITFCRVKSAFSSNEVALPLAAEEGFTGLMGDSQTCKANLPF 116
           SF+SC+ +    + GYSG     R+K          PL+   G TGL G           
Sbjct: 335 SFWSCSVS----KLGYSGTAIISRIK----------PLSVRYG-TGLSGH---------- 369

Query: 117 SMDDLEEFSKDELLSVDSEGRCIITDHSHFVLFNIYGPRAGGDDKERIQFK 167
                           D+EGR +  +   F L N Y P + GD  +R+  K
Sbjct: 370 ----------------DTEGRIVTAEFDSFYLINTYVPNS-GDGLKRLVLK 403