Miyakogusa Predicted Gene

Lj4g3v1037650.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1037650.1 tr|B9MXF8|B9MXF8_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_593841 PE=4
SV=1,42.34,4e-18,SUBFAMILY NOT NAMED,NULL; AP
ENDONUCLEASE,Exodeoxyribonuclease III xth; zf-GRF,Zinc finger,
GRF-type,CUFF.48310.1
         (526 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G36050.2 | Symbols:  | endonuclease/exonuclease/phosphatase f...   378   e-105
AT4G36050.1 | Symbols:  | endonuclease/exonuclease/phosphatase f...   372   e-103

>AT4G36050.2 | Symbols:  | endonuclease/exonuclease/phosphatase
           family protein | chr4:17052323-17055044 REVERSE
           LENGTH=610
          Length = 610

 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/438 (45%), Positives = 278/438 (63%), Gaps = 51/438 (11%)

Query: 88  RWETLLHQGRRIFVVGDLNIAPFAIDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRA 147
           RWE LL QGRR+FVVGDLNIAPFA+DRC+AGPDFE NEFR+WF+S+L+E  G FSDVFR+
Sbjct: 178 RWECLLRQGRRVFVVGDLNIAPFAMDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRS 237

Query: 148 KHPNKTEAYTCWAQNTGAEVFNFGSRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILT 207
           KHP + +A+TCW+ ++GAE FN+GSRIDHIL AGSCLH+ +D + HSF+ CHV +CDILT
Sbjct: 238 KHPERKDAFTCWSSSSGAEQFNYGSRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILT 297

Query: 208 EYKRCKPESTLSAHRWKGGRSIKLEGSDHAPVYMTLLEIPEVSLHSTPFLSARYVPMVHG 267
           EYKR K E+  +  RWKGG   K +GSDH PV+++  ++P++  HSTP L++RY+PM++G
Sbjct: 298 EYKRFKNENMPT--RWKGGLVTKFKGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYG 355

Query: 268 IQQTLVSMLVKRRVSEQTKSCEM------------VNEDISMG----------STYESIE 305
            QQTLVS+  KRR +E+ K+ E+            +  DIS G          S  +S  
Sbjct: 356 FQQTLVSVFKKRRANEEAKAIEVSCSSSTQSNTSSICGDISTGPLRNCGSMGISLEKSCS 415

Query: 306 PTNQTDSSTSECHFPSSQDSVCSILESKELSRGSSQEAAISKSGSGYEKSMPRKCNESKK 365
             N++ S  +E    ++  S+ ++  S  +   S +   IS+ G              +K
Sbjct: 416 FENKSTSGVTEAETVAATGSIDNL--SDGIRASSVRALNISRDG-------------DRK 460

Query: 366 KARNNQGSQLSLRSFFQKSTNLDNGVNNSCTDHSNNQAEPSQPDPHLRETSTAIDHSSSP 425
           KAR  Q SQLSL+SFF  ++ ++N  ++S +  S++ +   +    + E + +    S P
Sbjct: 461 KARKIQSSQLSLKSFFTTNSKVNNVEDSSSSYVSSSPSSQVE---SITEPNVSGKEDSEP 517

Query: 426 KQCEVNTDACDLDLAELNDSSRKEEKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVV 485
                  D            S  ++K++ A +EWQRIQ +MQNSIPLCKGHKE C+ARVV
Sbjct: 518 TTSTQEQD---------QTGSSAKQKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVV 568

Query: 486 KKQGSNFGRRFYVCARAE 503
           KK G  FGRRFYVC+RAE
Sbjct: 569 KKPGPTFGRRFYVCSRAE 586


>AT4G36050.1 | Symbols:  | endonuclease/exonuclease/phosphatase
           family protein | chr4:17052345-17054081 REVERSE
           LENGTH=408
          Length = 408

 Score =  372 bits (956), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/437 (45%), Positives = 278/437 (63%), Gaps = 51/437 (11%)

Query: 112 IDRCDAGPDFENNEFRRWFKSMLIENEGRFSDVFRAKHPNKTEAYTCWAQNTGAEVFNFG 171
           +DRC+AGPDFE NEFR+WF+S+L+E  G FSDVFR+KHP + +A+TCW+ ++GAE FN+G
Sbjct: 1   MDRCEAGPDFEKNEFRKWFRSLLVERGGSFSDVFRSKHPERKDAFTCWSSSSGAEQFNYG 60

Query: 172 SRIDHILCAGSCLHESDDLKCHSFIRCHVMDCDILTEYKRCKPESTLSAHRWKGGRSIKL 231
           SRIDHIL AGSCLH+ +D + HSF+ CHV +CDILTEYKR K E+  +  RWKGG   K 
Sbjct: 61  SRIDHILVAGSCLHQDEDKQGHSFLACHVKECDILTEYKRFKNENMPT--RWKGGLVTKF 118

Query: 232 EGSDHAPVYMTLLEIPEVSLHSTPFLSARYVPMVHGIQQTLVSMLVKRRVSEQTKSCEM- 290
           +GSDH PV+++  ++P++  HSTP L++RY+PM++G QQTLVS+  KRR +E+ K+ E+ 
Sbjct: 119 KGSDHVPVFISFDDLPDIPEHSTPPLASRYLPMIYGFQQTLVSVFKKRRANEEAKAIEVS 178

Query: 291 -----------VNEDISMG----------STYESIEPTNQTDSSTSECHFPSSQDSVCSI 329
                      +  DIS G          S  +S    N++ S  +E    ++  S+ ++
Sbjct: 179 CSSSTQSNTSSICGDISTGPLRNCGSMGISLEKSCSFENKSTSGVTEAETVAATGSIDNL 238

Query: 330 LESKELSRGSSQEAAISKSGSGYEKSMPRKCNESKKKARNNQGSQLSLRSFFQKSTNLDN 389
             S  +   S +   IS+ G              +KKAR  Q SQLSL+SFF  ++ ++N
Sbjct: 239 --SDGIRASSVRALNISRDG-------------DRKKARKIQSSQLSLKSFFTTNSKVNN 283

Query: 390 GVNNSCTDHSNNQAEPSQPDPHLRETSTAIDHSSSPKQCEVNTDACDLDLAELNDSSRKE 449
             ++S +  S++ +   +    + E + +    S P       D            S  +
Sbjct: 284 VEDSSSSYVSSSPSSQVE---SITEPNVSGKEDSEPTTSTQEQDQT---------GSSAK 331

Query: 450 EKSNVASLEWQRIQQMMQNSIPLCKGHKERCIARVVKKQGSNFGRRFYVCARAEGPASNP 509
           +K++ A +EWQRIQ +MQNSIPLCKGHKE C+ARVVKK G  FGRRFYVC+RAEGP+SNP
Sbjct: 332 QKNDAALMEWQRIQNLMQNSIPLCKGHKEACVARVVKKPGPTFGRRFYVCSRAEGPSSNP 391

Query: 510 EANCGYFKWATSKSRNK 526
           EANCGYFKWA+SK R+K
Sbjct: 392 EANCGYFKWASSKFRDK 408