Miyakogusa Predicted Gene

Lj4g3v1037490.4

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj4g3v1037490.4 tr|Q0JFE3|Q0JFE3_ORYSJ Os04g0110600 protein
OS=Oryza sativa subsp. japonica GN=Os04g0110600 PE=4
SV=,82.69,3e-18,ZF_RANBP2_2,Zinc finger, RanBP2-type; ZINC FINGER
PROTEIN,NULL; Zinc finger domain,Zinc finger, RanB,CUFF.48442.4
         (379 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17975.1 | Symbols:  | zinc finger (Ran-binding) family prote...   289   2e-78
AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...    52   8e-07
AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfami...    50   3e-06

>AT2G17975.1 | Symbols:  | zinc finger (Ran-binding) family protein
           | chr2:7822238-7823970 REVERSE LENGTH=268
          Length = 268

 Score =  289 bits (740), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 182/318 (57%), Gaps = 64/318 (20%)

Query: 60  DWECSSCNNRNYAFRSFCNRCKQPRLLVDTKTPADSKWLPRIGDWICTGCTNNNYASREK 119
           DWEC  C NRNYAFRSFCNRCKQPRL++D  T  +SKWLPRIGDWICTGCTNNNYASREK
Sbjct: 8   DWECLGCRNRNYAFRSFCNRCKQPRLIMDNNTSPNSKWLPRIGDWICTGCTNNNYASREK 67

Query: 120 CKKCGQPKEVAAMPAVAMTGASFPPYPHYVSRAPGGPAQKMNIGFNGLIGNGVLPQPLHL 179
           CKKCGQ KEVAA+ A+A+ GAS   + HY +R P    Q                     
Sbjct: 68  CKKCGQSKEVAALSALAIPGASLQTHLHYFTRGPESHDQ--------------------- 106

Query: 180 NSNWPVTGADKYGVHPVSMWLPGGNYSSGHPYVNPSSQDLSIAKGWRNGDWICNCGFHNY 239
                                PG    S   + N ++Q  S+ K WR+GDWIC CGFHNY
Sbjct: 107 ---------------------PG----SLLAFSNATNQ-ASVHKEWRSGDWICRCGFHNY 140

Query: 240 SSRSQCKKCDAFPP-ALGTKRLASEELVYDWDNKRLNVGTTNDRQHTFTSLEQAVGNSAD 298
           SSR QCKKC+   P ALGTKRLASE L ++WD+KRLN G T                S  
Sbjct: 141 SSRIQCKKCNEIAPLALGTKRLASEALAHEWDSKRLNQGYT----------------SMQ 184

Query: 299 PKPGVFPSYPGINSSTAXXXXXXXXXXXXVSTPALLGKGAKQWRSGDWMCTNCNNHNYAS 358
            +  ++ S+PG++                 STPALLG G KQWR GDWMCTNC NHNYAS
Sbjct: 185 TQSAIYASFPGMSLGRVSNWQLPLPFLQQHSTPALLGMGVKQWRDGDWMCTNCKNHNYAS 244

Query: 359 RLHCNRCKTQRVAPMQPV 376
           R  CNRCKT R    Q +
Sbjct: 245 RAECNRCKTTRDILDQDI 262


>AT2G26695.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr2:11365275-11365789 FORWARD LENGTH=138
          Length = 138

 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 10/95 (10%)

Query: 60  DWECSSCNNRNYAFRSFCNRCKQPRL-LVDTKTPADSKWLPRIGDWICTG--CTNNNYAS 116
           DW C +C + N+  R  C +C  P+   VD  T   ++     GDW C    C ++NYAS
Sbjct: 7   DWLCGACQHANFKKRESCQKCGYPKFGGVDVSTYLYNRTEVMAGDWYCGALNCGSHNYAS 66

Query: 117 REKCKKCGQPKEV-------AAMPAVAMTGASFPP 144
           R  C +CG  K         A M A    GA+ PP
Sbjct: 67  RTSCYRCGMIKVEYTEQYYGAQMVAYGNDGAACPP 101


>AT5G25490.1 | Symbols:  | Ran BP2/NZF zinc finger-like superfamily
           protein | chr5:8876639-8877339 FORWARD LENGTH=170
          Length = 170

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 86/283 (30%), Gaps = 120/283 (42%)

Query: 98  LPRIGDWICTGCTNNNYASREKCKKCGQPKEVAAMPAVAMTGASFPPYPHYVSRAPGGPA 157
           + R GDW C  C++ N+  R+ C++C +P+                         PGG +
Sbjct: 1   MNRPGDWNCRLCSHLNFQRRDSCQRCREPR-------------------------PGGIS 35

Query: 158 QKMNIGFNGLIGNGVLPQPLHLNSNWPVTGADKYGVHPVSMWLPGGNYSSGHPYVNPSSQ 217
             +  GF G                            PVS                 SS 
Sbjct: 36  TDLLSGFGG---------------------------RPVS-----------------SSF 51

Query: 218 DLSIAKGWRNGDWICN---CGFHNYSSRSQCKKCDAFPPALGTKRLASEELVYDWDNKRL 274
             +     R GDW CN   CG HN+++RS C KC A          A+     D     +
Sbjct: 52  GFNTGPDVRPGDWYCNLGDCGTHNFANRSSCFKCGAAKDEFSCSSAAATTGFMD-----M 106

Query: 275 NVGTTNDRQHTFTSLEQAVGNSADPKPGVFPSYPGINSSTAXXXXXXXXXXXXVSTPALL 334
           NVG          S     G    P                                   
Sbjct: 107 NVGPRRGLFGFGGSSSGGGGTGRSP----------------------------------- 131

Query: 335 GKGAKQWRSGDWMC--TNCNNHNYASRLHCNRCKTQRVAPMQP 375
                 W+SGDW+C  + CN HN+ASR  C RC   +    +P
Sbjct: 132 ------WKSGDWICPRSGCNEHNFASRSECFRCNAPKELATEP 168