Miyakogusa Predicted Gene
- Lj4g3v1036440.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj4g3v1036440.1 Non Chatacterized Hit- tr|C5Z1V7|C5Z1V7_SORBI
Putative uncharacterized protein Sb10g030175
(Fragment,49.46,0.000000000000001,coiled-coil,NULL; FAMILY NOT
NAMED,NULL; seg,NULL,CUFF.48292.1
(344 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17990.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 361 e-100
AT5G66250.3 | Symbols: | kinectin-related | chr5:26469050-26470... 304 6e-83
AT5G66250.2 | Symbols: | kinectin-related | chr5:26469050-26470... 304 6e-83
AT5G66250.1 | Symbols: | kinectin-related | chr5:26469050-26470... 304 6e-83
AT5G66250.4 | Symbols: | kinectin-related | chr5:26469050-26470... 291 4e-79
AT4G36105.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 187 8e-48
AT4G36105.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 186 2e-47
>AT2G17990.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: kinectin-related (TAIR:AT5G66250.3); Has 7578 Blast
hits to 6129 proteins in 783 species: Archae - 220;
Bacteria - 1045; Metazoa - 3605; Fungi - 575; Plants -
442; Viruses - 38; Other Eukaryotes - 1653 (source: NCBI
BLink). | chr2:7827480-7828596 FORWARD LENGTH=338
Length = 338
Score = 361 bits (927), Expect = e-100, Method: Compositional matrix adjust.
Identities = 192/349 (55%), Positives = 260/349 (74%), Gaps = 16/349 (4%)
Query: 1 MATDEDIGMSAMKSKLSQSHETWKQGMERNQSQVDALQAKLMEVKACIQ-GSKEDTKKEL 59
MA E+ +SA S ++ E W+ +E + QVD+L+A+L++VKA ++ GS+ED +KEL
Sbjct: 1 MAGKEETDVSAQGSLTREATEIWRSELESRRFQVDSLEAELVDVKAYLEFGSEEDARKEL 60
Query: 60 EVLWRRVKTTATLLTYLKSKARIMAVPH-LAHTSCG---IKKLDGIGLVDKDGIPLSGWS 115
VL RV++TAT+L YL+SKAR++A+P LA+ SCG I++L G+ LV+KDG S
Sbjct: 61 GVLSGRVRSTATMLRYLRSKARVLAIPDDLANVSCGVEQIEELKGLNLVEKDG-----GS 115
Query: 116 KNVDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMVSDVMEALVKRVLLAES 175
+ D P+ + G L +D Y E+L+S++MV+DV+++LV+RV +AES
Sbjct: 116 SSSDGARNTNPETRRY------SGSLGVEDGAYTNEMLQSIEMVTDVLDSLVRRVTVAES 169
Query: 176 ETTIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADLVEETTX 235
E+ ++KE+A LG+EEI RK+ Q+EN+S+KLEEMERFA GTNS+LN+MR+R+ +LVEET
Sbjct: 170 ESAVQKERALLGEEEISRKTIQIENLSVKLEEMERFAYGTNSVLNEMRERIEELVEETMR 229
Query: 236 XXXXXXXXXXXLCRVKQEFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQL 295
LCRVK+EFESLKSYVS+ VRETLLSSE+QF+TIE+LFERLV KTTQL
Sbjct: 230 QREKAVENEEELCRVKREFESLKSYVSTFTNVRETLLSSERQFKTIEELFERLVTKTTQL 289
Query: 296 EGEKMQKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMMGLSSSHM 344
EGEK QKE EVQKLMEENV+L+ALLDKKEAQ+LALNEQCK+M LS+S++
Sbjct: 290 EGEKAQKEVEVQKLMEENVKLTALLDKKEAQLLALNEQCKVMALSASNI 338
>AT5G66250.3 | Symbols: | kinectin-related | chr5:26469050-26470376
FORWARD LENGTH=306
Length = 306
Score = 304 bits (778), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 227/344 (65%), Gaps = 42/344 (12%)
Query: 1 MATDEDIGMSAMKSKLSQSH-ETWKQG-MERNQS-QVDALQAKLMEVKACIQGSKEDTKK 57
MA E + S ++SK+++ H + W +G ME+++S + L+ + + + SK+ +K
Sbjct: 1 MAEKEVVSASTLESKITEDHHDIWIRGAMEKSRSSNISVLKDRFIAAEDSALVSKDVAQK 60
Query: 58 ELEVLWRRVKTTATLLTYLKSKARIMAVPHLAHTSCGIKKLDGIGLVDKDGIPLSGWSKN 117
++E+L RRVKT LLTYLKSKA +A LA+ S +L +D I
Sbjct: 61 DIEILLRRVKTATALLTYLKSKATTVAAADLANLSLETDQL-------QDTI-------- 105
Query: 118 VDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMVSDVMEALVKRVLLAESET 177
DE D Y+ E+L+ V+ V+ VME+L +R +AESE
Sbjct: 106 ------------------------DEHDGTYVTEMLQHVETVTGVMESLARRAFIAESEA 141
Query: 178 TIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADLVEETTXXX 237
IEK K L QEEI RK QLENMS+KLE+ME+FALGT+SIL +MRQRV DLVEET+
Sbjct: 142 AIEKGKVVLSQEEIQRKVGQLENMSVKLEDMEKFALGTSSILCEMRQRVDDLVEETSRQK 201
Query: 238 XXXXXXXXXLCRVKQEFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEG 297
L RV+++FESLKSYV+SLI+VRETL+SSEKQFQTIE+LFERLV KTTQLE
Sbjct: 202 QRATENELELSRVRRDFESLKSYVTSLISVRETLVSSEKQFQTIERLFERLVAKTTQLES 261
Query: 298 EKMQKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMMGLSS 341
EK+QKEAEVQKLMEENVRL+AL+DKKEAQ+LA+NEQCKMM LSS
Sbjct: 262 EKVQKEAEVQKLMEENVRLTALVDKKEAQLLAMNEQCKMMALSS 305
>AT5G66250.2 | Symbols: | kinectin-related | chr5:26469050-26470376
FORWARD LENGTH=306
Length = 306
Score = 304 bits (778), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 227/344 (65%), Gaps = 42/344 (12%)
Query: 1 MATDEDIGMSAMKSKLSQSH-ETWKQG-MERNQS-QVDALQAKLMEVKACIQGSKEDTKK 57
MA E + S ++SK+++ H + W +G ME+++S + L+ + + + SK+ +K
Sbjct: 1 MAEKEVVSASTLESKITEDHHDIWIRGAMEKSRSSNISVLKDRFIAAEDSALVSKDVAQK 60
Query: 58 ELEVLWRRVKTTATLLTYLKSKARIMAVPHLAHTSCGIKKLDGIGLVDKDGIPLSGWSKN 117
++E+L RRVKT LLTYLKSKA +A LA+ S +L +D I
Sbjct: 61 DIEILLRRVKTATALLTYLKSKATTVAAADLANLSLETDQL-------QDTI-------- 105
Query: 118 VDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMVSDVMEALVKRVLLAESET 177
DE D Y+ E+L+ V+ V+ VME+L +R +AESE
Sbjct: 106 ------------------------DEHDGTYVTEMLQHVETVTGVMESLARRAFIAESEA 141
Query: 178 TIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADLVEETTXXX 237
IEK K L QEEI RK QLENMS+KLE+ME+FALGT+SIL +MRQRV DLVEET+
Sbjct: 142 AIEKGKVVLSQEEIQRKVGQLENMSVKLEDMEKFALGTSSILCEMRQRVDDLVEETSRQK 201
Query: 238 XXXXXXXXXLCRVKQEFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEG 297
L RV+++FESLKSYV+SLI+VRETL+SSEKQFQTIE+LFERLV KTTQLE
Sbjct: 202 QRATENELELSRVRRDFESLKSYVTSLISVRETLVSSEKQFQTIERLFERLVAKTTQLES 261
Query: 298 EKMQKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMMGLSS 341
EK+QKEAEVQKLMEENVRL+AL+DKKEAQ+LA+NEQCKMM LSS
Sbjct: 262 EKVQKEAEVQKLMEENVRLTALVDKKEAQLLAMNEQCKMMALSS 305
>AT5G66250.1 | Symbols: | kinectin-related | chr5:26469050-26470376
FORWARD LENGTH=306
Length = 306
Score = 304 bits (778), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 227/344 (65%), Gaps = 42/344 (12%)
Query: 1 MATDEDIGMSAMKSKLSQSH-ETWKQG-MERNQS-QVDALQAKLMEVKACIQGSKEDTKK 57
MA E + S ++SK+++ H + W +G ME+++S + L+ + + + SK+ +K
Sbjct: 1 MAEKEVVSASTLESKITEDHHDIWIRGAMEKSRSSNISVLKDRFIAAEDSALVSKDVAQK 60
Query: 58 ELEVLWRRVKTTATLLTYLKSKARIMAVPHLAHTSCGIKKLDGIGLVDKDGIPLSGWSKN 117
++E+L RRVKT LLTYLKSKA +A LA+ S +L +D I
Sbjct: 61 DIEILLRRVKTATALLTYLKSKATTVAAADLANLSLETDQL-------QDTI-------- 105
Query: 118 VDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMVSDVMEALVKRVLLAESET 177
DE D Y+ E+L+ V+ V+ VME+L +R +AESE
Sbjct: 106 ------------------------DEHDGTYVTEMLQHVETVTGVMESLARRAFIAESEA 141
Query: 178 TIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADLVEETTXXX 237
IEK K L QEEI RK QLENMS+KLE+ME+FALGT+SIL +MRQRV DLVEET+
Sbjct: 142 AIEKGKVVLSQEEIQRKVGQLENMSVKLEDMEKFALGTSSILCEMRQRVDDLVEETSRQK 201
Query: 238 XXXXXXXXXLCRVKQEFESLKSYVSSLITVRETLLSSEKQFQTIEKLFERLVGKTTQLEG 297
L RV+++FESLKSYV+SLI+VRETL+SSEKQFQTIE+LFERLV KTTQLE
Sbjct: 202 QRATENELELSRVRRDFESLKSYVTSLISVRETLVSSEKQFQTIERLFERLVAKTTQLES 261
Query: 298 EKMQKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMMGLSS 341
EK+QKEAEVQKLMEENVRL+AL+DKKEAQ+LA+NEQCKMM LSS
Sbjct: 262 EKVQKEAEVQKLMEENVRLTALVDKKEAQLLAMNEQCKMMALSS 305
>AT5G66250.4 | Symbols: | kinectin-related | chr5:26469050-26470376
FORWARD LENGTH=326
Length = 326
Score = 291 bits (746), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/364 (48%), Positives = 227/364 (62%), Gaps = 62/364 (17%)
Query: 1 MATDEDIGMSAMKSKLSQSH-ETWKQG-MERNQS-QVDALQAKLMEVKACIQGSKEDTKK 57
MA E + S ++SK+++ H + W +G ME+++S + L+ + + + SK+ +K
Sbjct: 1 MAEKEVVSASTLESKITEDHHDIWIRGAMEKSRSSNISVLKDRFIAAEDSALVSKDVAQK 60
Query: 58 ELEVLWRRVKTTATLLTYLKSKARIMAVPHLAHTSCGIKKLDGIGLVDKDGIPLSGWSKN 117
++E+L RRVKT LLTYLKSKA +A LA+ S +L +D I
Sbjct: 61 DIEILLRRVKTATALLTYLKSKATTVAAADLANLSLETDQL-------QDTI-------- 105
Query: 118 VDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMVSDVMEALVKRVLLAESET 177
DE D Y+ E+L+ V+ V+ VME+L +R +AESE
Sbjct: 106 ------------------------DEHDGTYVTEMLQHVETVTGVMESLARRAFIAESEA 141
Query: 178 TIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADLVEETTXXX 237
IEK K L QEEI RK QLENMS+KLE+ME+FALGT+SIL +MRQRV DLVEET+
Sbjct: 142 AIEKGKVVLSQEEIQRKVGQLENMSVKLEDMEKFALGTSSILCEMRQRVDDLVEETSRQK 201
Query: 238 XXXXXXXXXLCRVKQEFESLKSYVSSLITVRETLLSSEKQFQTIEKLFER---------- 287
L RV+++FESLKSYV+SLI+VRETL+SSEKQFQTIE+LFER
Sbjct: 202 QRATENELELSRVRRDFESLKSYVTSLISVRETLVSSEKQFQTIERLFERFIIVSKFAFM 261
Query: 288 ----------LVGKTTQLEGEKMQKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMM 337
LV KTTQLE EK+QKEAEVQKLMEENVRL+AL+DKKEAQ+LA+NEQCKMM
Sbjct: 262 ASCFRGYKQKLVAKTTQLESEKVQKEAEVQKLMEENVRLTALVDKKEAQLLAMNEQCKMM 321
Query: 338 GLSS 341
LSS
Sbjct: 322 ALSS 325
>AT4G36105.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: nucleus;
EXPRESSED IN: 6 plant structures; EXPRESSED DURING:
LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G17990.1); Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). |
chr4:17083965-17084951 FORWARD LENGTH=245
Length = 245
Score = 187 bits (475), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 127/296 (42%), Positives = 173/296 (58%), Gaps = 71/296 (23%)
Query: 51 SKEDTKKELEVLWRRVKTTATLLTYLKSKARIMAVPHLAHTSCGIKKLDGIGLVDKDGIP 110
S+ED +KEL+VL RVK+ AT L+YL+SKARI+AVP L S G ++L KD
Sbjct: 19 SEEDARKELKVLLDRVKSAATSLSYLRSKARILAVPGL---SLGAQQLQL-----KDDTT 70
Query: 111 LSGWSKNVDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMV-SDVMEALVKR 169
L+G +KN D L +D VY L+S++MV +D +E+L++R
Sbjct: 71 LAGTNKNKD--------------------SLVIEDGVYTLNTLQSIEMVITDALESLLRR 110
Query: 170 VLLAESETTIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADL 229
V AESET KEK + +EEI RK+ Q++N+S++LE+ ER
Sbjct: 111 VTAAESETCSHKEKVIICEEEITRKTVQIQNLSLRLEQTERI------------------ 152
Query: 230 VEETTXXXXXXXXXXXXLCRVKQEFESLKSYVSSLITVRETLL-SSEKQFQTIEKLFERL 288
V E ESLK+ +++ V +TLL SS + FQTIE RL
Sbjct: 153 --------------------VMTECESLKNALTASNNVLDTLLSSSRRHFQTIEA---RL 189
Query: 289 VGKTTQLEGEKMQKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMMGLSSSHM 344
V K+TQLEGEK QKE +VQKLMEEN++L+ LLDKKEAQ+LALNEQCK+M L++S++
Sbjct: 190 VAKSTQLEGEKAQKEVQVQKLMEENMKLTTLLDKKEAQLLALNEQCKVMALNASNI 245
>AT4G36105.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: leaf apex,
cauline leaf, flower, carpel, leaf; EXPRESSED DURING:
LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G17990.1). | chr4:17083965-17084951 FORWARD
LENGTH=251
Length = 251
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/299 (42%), Positives = 174/299 (58%), Gaps = 71/299 (23%)
Query: 51 SKEDTKKELEVLWRRVKTTATLLTYLKSKARIMAVPHLAHTSCGIKKLDGIGLVDKDGIP 110
S+ED +KEL+VL RVK+ AT L+YL+SKARI+AVP L S G ++L KD
Sbjct: 19 SEEDARKELKVLLDRVKSAATSLSYLRSKARILAVPGL---SLGAQQLQL-----KDDTT 70
Query: 111 LSGWSKNVDLTSFDGPDDESWIGISCQRGFLDEQDAVYIGEILKSVQMV-SDVMEALVKR 169
L+G +KN D L +D VY L+S++MV +D +E+L++R
Sbjct: 71 LAGTNKNKD--------------------SLVIEDGVYTLNTLQSIEMVITDALESLLRR 110
Query: 170 VLLAESETTIEKEKASLGQEEIMRKSAQLENMSMKLEEMERFALGTNSILNDMRQRVADL 229
V AESET KEK + +EEI RK+ Q++N+S++LE+ ER
Sbjct: 111 VTAAESETCSHKEKVIICEEEITRKTVQIQNLSLRLEQTERI------------------ 152
Query: 230 VEETTXXXXXXXXXXXXLCRVKQEFESLKSYVSSLITVRETLL-SSEKQFQTIE---KLF 285
V E ESLK+ +++ V +TLL SS + FQTIE KL
Sbjct: 153 --------------------VMTECESLKNALTASNNVLDTLLSSSRRHFQTIEARYKLQ 192
Query: 286 ERLVGKTTQLEGEKMQKEAEVQKLMEENVRLSALLDKKEAQILALNEQCKMMGLSSSHM 344
LV K+TQLEGEK QKE +VQKLMEEN++L+ LLDKKEAQ+LALNEQCK+M L++S++
Sbjct: 193 SMLVAKSTQLEGEKAQKEVQVQKLMEENMKLTTLLDKKEAQLLALNEQCKVMALNASNI 251